Rhessys - User contributions [en]

Climate data

2012-10-25T18:21:18Z

Garcia: /* Running RHESSys with ASCII Gridded Climate Data */

==Met Station Based Climate Data==

Climate data in this form is based on having a single file for each meteorological station available. Each base station is represented by
it's own base station file, and separate files for each climate variable as listed in the base station file. At the very least, daily time
series of tmin, tmax, and rain are required.

Climate inputs are linked to particular zones by the climate station ID affiliated with that zone. A single climate station (or base station) will typically serve multiple zones within the landscape. Each base station is described by a base station file.

Example Base Station File:
<pre>
101 base_station_id
100.0 x_coordinate
100.0 y_coordinate
22.9 z_coordinate
2.0 effective_lai
22.9 screen_height
clim\rbw_prime_annual annual_climate_prefix
0 number_non_critical_annual_sequences
clim\rbw_prime_monthly monthly_climate_prefix
0 number_non_critical_monthly_sequences
clim\rbw daily_climate_prefix
2
ndep_NO3
ndep_NH4
0
clim\rbw_prime_hourly hourly_climate_prefix
0 number_non_critical_hourly_sequences
</pre>

{| {{table}}
| align="center" style="background:#f0f0f0;"|'''Climate Input Sequence Name / File Extension'''
| align="center" style="background:#f0f0f0;"|'''Description'''
| align="center" style="background:#f0f0f0;"|'''Units'''
|-
| rain||precipitation (rain + snow)* required||meters
|-
| tmin||minimum daily temperature* required||°C
|-
| tmax||maximum daily temperature* required||°C
|-
| tavg||average daily temperature||°C
|-
| dayl||day length||seconds
|-
| daytime_rain_duration||duration of rainfall||hours
|-
| LAI_scalar||zone and seasonal scaling of LAI - only applied to stratum of non-zero height||Unitless
|-
| Ldown||incoming longwave radiation||KJ / (meters2)/day
|-
| Kdown_direct||incoming direct shortwave radiation||KJ / (meters2)/day
|-
| Kdown_diffuse||incoming diffuse shortwave radiation||KJ / (meters2)/day
|-
| ndep_NO3||nitrogen deposition as NO3||kg / (meters2)/day
|-
| ndep_NH4||nitrogen deposition as NH4||kg / (meters2) /day
|-
| PAR_direct||incoming direct PAR radiation||KJ / (meters2)/day
|-
| PAR_diffuse||incoming diffuse PAR radiation||KJ / (meters2)/day
|-
| relative_humidity||Relative Humidity||Range (0-1)
|-
| tday||Mean Daytime Temperature||°C
|-
| tnightmax||Night time temperature at sundown (used for soil heat flux)||°C
|-
| tsoil||Soil temperature||°C
|-
| vpd||Vapour pressure deficit||Pa
|-
| wind||Wind speed||meters/ sec.
|-
| CO2||Carbon Dioxide||parts per million/year
|-
| lapse_rate_tmin || minimum daily temperature lapse rate with elevation || °C/m
|-
| lapse_rate_tmax || maximum daily temperature lapse rate with elevation || °C/m

|}

All possible base station filenames must be listed in the worldfile header, as described in the discussion of grass2world below.

===Format for Time Series Input Files===
The first line of each input time series file must give the start date of the time series. The start date of the input must precede the start date listed in the worldfile. Following the start date, time series values are listed sequentially. For example:
example_simulation_daily.rain will contain the following

<pre>
1986 1 1 1
0.0028
0.000
0.0157
0.000
…
</pre>

==ASCII Gridded Climate Data==

Climate data in gridded form is not tied to any particular met station, but is a grid of climate data over the watershed such as an interpolation
between multiple climate stations, or downscaled data from a climate model. While it is possible to fake gridded climate data by representing each grid cell as a unique climate station, using gridded climate files is easier to work with.

Gridded climate data will have only a single base file, and a single file for each climate variable. The base file is identical to that of non-gridded climate data,
except that the first line that set the base station id is replaced with a line specifying the total number of grid cells. So if you had a gridded climate dataset
identical to the one specified above, but with 4 cells, your climate base file would be: 
<pre>
4 grid_cells
100.0 x_coordinate
100.0 y_coordinate
22.9 z_coordinate
2.0 effective_lai
22.9 screen_height
clim\rbw_prime_annual annual_climate_prefix
0 number_non_critical_annual_sequences
clim\rbw_prime_monthly monthly_climate_prefix
0 number_non_critical_monthly_sequences
clim\rbw daily_climate_prefix
2
ndep_NO3
ndep_NH4
0
clim\rbw_prime_hourly hourly_climate_prefix
0 number_non_critical_hourly_sequences
</pre>

The climate variable files will look similar to those from the standard met station based climate input with three important differences.
 (1) The first line specifies the total number of grid cells at the top of the climate file.
 (2) The third line (after the start date, which is now your second line) specifies the grid cell index for each column of data. These numbers must match
up with the values of the GIS map specified as the base_station_ID variable in your template file.
 (3) The fourth line is the elevation for the grid cell, which will also match the values of your zone elevations within your world file. 
The following is a climate file with four grid cells with index numbers 1-4, their elevations, and four climate data values specific to their cell:

{| {{table}}
| align="center" style="background:#f0f0f0;"|'''Grid Cell Index'''
| align="center" style="background:#f0f0f0;"|'''Elevation'''
| align="center" style="background:#f0f0f0;"|'''Climate Data for Grid Cell Index'''
|-
| 1|| 100.1|| 24, 24, 21, 19||
|-
| 2|| 200.2|| 26, 25, 23, 21||
|-
| 3|| 300.3|| 27, 25, 22, 19||
|-
| 4|| 400.4|| 23, 21, 22, 18||
|}
<pre>
4
1986 1 1 1
1 2 3 4
100.1 200.2 300.3 400.4
24 26 27 23
24 25 25 21
21 23 22 22
19 21 19 18
…
</pre>

===Running RHESSys with ASCII Gridded Climate Data===

# Edit your template file to refer to the climate base file.
# When running RHESSys, use the command line option '-asciigrid' and RHESSs will properly deal with your ASCII gridded climate data.

 

==NetCDF Gridded Climate Data==

Similar to the ASCII gridded climate strategy described above, RHESSys can read NetCDF files as spatially distributed climate inputs. The method to implement is also similar: (1) setup a unique ID grid based on your NetCDF grid cells and assign zone IDs, (2) use a script to setup a NetCDF base station file, (3) run RHESSys with the NetCDF grid flag. 

There is a bit of setup required to use NetCDF climate inputs. In particular, you need to create a unique ID map to match zone IDs to NetCDF cells and you need to create ID, elevation, lai, and screen height ascii maps to use as inputs to the createbas_netcdf script to create a NetCDF base station file. Specific steps are described below. 

Steps to generate x and y maps for using netcdf climate files:
<ol><li>Run gdal steps to convert from netcdf to TIF for one variable.</li>
<li>Create new GRASS location using TIF file as region/projection.</li>
<li>Use g.region to set resolution to match your patch map (e.g., 30m).</li>
<li>Use r.proj to import your full basin extent.</li>
<li>Use g.region to set region to basin extent.</li>
<li>Use cxy to generate x and y maps and unique ID map.</li>
<li>Import dem and lai maps into netcdf location and generate summary statistics by unique grid cell ID.</li>
<li>Generate screen height map.</li>
<li>Export cellid, dem, lai, and screen ascii files.</li>
<li>Generate x and y coord text files.</li>
<li>Use createbas_netcdf and ascii maps to generate base station file.</li>
<li>Use r.proj to import the grid cell unique ID map into your main location (where patch map, etc. live).</li>
<li>Generate worldfile using the unique cell ID map as the zone base station ID map.</li></ol>
 
===Example Commands (using DAYMET NetCDF format)===
Steps to convert NetCDF to TIF: 
Get metadata:
<pre>
gdalinfo tmax.nc
gdalinfo NETCDF:tmax.nc:lat
</pre>
Replace the coordinates in the ullr below with the ones reported in the metadata (upperleft_x upperleft_y lowerright_x lowerright_Y): 
(projection info below is for DAYMET; replace for other climate inputs)
<pre>
gdal_translate -of GTiff -a_ullr -535000.000 -672000.000 -347000.000 -895000.000 -a_srs "+proj=lcc +datum=WGS84 +lat_1=25 n +lat_2=60n +lat_0=42.5n +lon_0=100w" NETCDF:"tmax.nc":tmax tmax1980.tif
</pre>
GRASS processing: 
In GRASS, create a new NetCDF location to match the TIF you just created. 
Import needed maps from your main project GRASS location: 
<pre>
r.in.gdal input=tmax1980.tif output=tmax80 band=1
g.region res=100
r.proj location=grasssf mapset=patch_fullveg input=basin.fullveg output=basin --overwrite
r.proj location=grasssf mapset=patch_fullveg input=dem30m output=dem --overwrite
r.proj location=GRASStemp mapset=upforks input=modlaigap_090829 output=modlai --overwrite
</pre>
Create unique ID map: 
(example below is for DAYMET at 1000-m resolution)
<pre>
g.region rast=tmax80
cxy -v xmap=xmap1k ymap=ymap1k --overwrite
r.mapcalc "xy1k=xmap1k+ymap1k"
g.region rast=basin align=tmax80 res=1000
r.clump input=xy1k output=uni1k --overwrite
</pre>
Generate average elevation by unique cell ID and clip grid cells to extent of DEM (matches basin):
<pre>
g.region res=100
r.statistics base=uni1k cover=dem method=average output=dem1k_rc --overwrite
g.region res=1000
r.mapcalc "dem1k=@dem1k_rc"
r.mapcalc "uni1k=if(isnull(dem1k),dem1k,uni1k)"
r.clump input=uni1k output=uni1k --overwrite
</pre>
Generate average LAI by unique cell ID:
<pre>
g.region res=100
r.statistics base=uni1k cover=modlai method=average output=lai1k_rc --overwrite
g.region res=1000
r.mapcalc "lai1k=@lai1k_rc"
</pre>
Generate screen height map: 
(this example sets screen height to 2 m for all grid cells)
<pre>
r.mapcalc "two=2.0"
</pre>
Output ascii files:
<pre>
r.out.arc input=uni1k output=cellid.asc
r.out.arc input=dem1k output=dem.asc
r.out.arc input=lai1k output=lai.asc
r.out.arc input=two output=screen.asc
</pre>
Create base station file: 
Generate files for coords table: 
First convert to integer for running statistics (may use multipliers to maintain precision if needed):
<pre>
g.region res=1000
r.mapcalc "xmap1ki=int(xmap1k)"
r.statistics base=uni1k cover=xmap1ki method=average output=xmap1ki_rc --overwrite
r.category xmap1ki_rc > id_x.txt
r.mapcalc "ymap1ki=int(ymap1k)"
r.statistics base=uni1k cover=ymap1ki method=average output=ymap1ki_rc --overwrite
r.category ymap1ki_rc > id_y.txt
</pre>
Outside of GRASS, merge these two x, y coord text files into one list with: ID XCOORD YCOORD 
The file should look something like:
<pre>
1 -1609500 -432500
2 -1608500 -432500
3 -1607500 -432500
...
</pre>
Run script to make base station file:
<pre>
createbas_netcdf cellid.asc lai.asc dem.asc screen.asc id_xy.txt netcdf_base.txt
</pre>
Your base station file should look something like the sample below. Edit lines 2-12 as needed:
<pre>
1111 grid_cells
708 location_searching_distance /* Max distance that the routine will search for a NetCDF grid cell in native units. This value is for a 1000-m grid cell resolution. */
1980 year_start_index /* In DAYMET, the time index counts up from 1/1/1980. Change this year to start the index at another year (on 1/1/XXXX). */
0 day_offset /* If you need to offset the day index. There is some issue with NetCDF4 where this should be 1 (left in from orig mingliang code). */
1 leap_year_include /* Whether or not to include leap year additional days (1=include, 0=clip to 365). */
0.001 precip_multiplier /* Precip multiplier if needed (e.g., this value converts from NetCDF precip in mm to RHESSys precip in m). */
../clim/daymet_netcdf/tmax_19802011.nc netcdf_tmax_filename /* Pathname to the Tmax NetCDF file. */
tmax netcdf_var_tmax /* Variable name for tmax in the NetCDF file. */
../clim/daymet_netcdf/tmin_19802011.nc netcdf_tmin_filename /* Pathname to the Tmin NetCDF file. */
tmin netcdf_var_tmin /* Variable name for tmin in the NetCDF file. */
../clim/daymet_netcdf/prcp_19802011.nc netcdf_rain_filename /* Pathname to the Precip NetCDF file. */
prcp netcdf_var_rain /* Variable name for precip in the NetCDF file. */
1 base_station_id
-1609500.000000 x_coordinate
-432500.000000 y_coordinate
1892.823486 z_coordinate
2.900000 effective_lai
2.000000 screen_height
2 base_station_id
-1608500.000000 x_coordinate
-432500.000000 y_coordinate
1856.814819 z_coordinate
2.900000 effective_lai
2.000000 screen_height
...
</pre>
Go to your main project GRASS location (where your patch map, etc. live). 
Import necessary maps:
<pre>
r.proj location=grass_daymet mapset=PERMANENT input=uni1k output=uni1k --overwrite
</pre>
Use this map in the template as the zone base station ID map.

===Running RHESSys with NetCDF Gridded Climate Data===

# Edit your template file to refer to the NetCDF climate base file.
# When running RHESSys, use the command line option '-netcdfgrid' and RHESSs will properly deal with your NetCDF gridded climate data.

Climate data

2012-09-18T22:25:36Z

Garcia: /* Gridded Climate Data */

Climate data

2012-09-18T22:12:13Z

Garcia: /* Gridded Climate Data */

Climate data

2012-09-18T22:10:44Z

Garcia: /* Gridded Climate Data */

Climate data

2012-09-18T22:02:37Z

Garcia: /* Gridded Climate Data */

Output Files

2012-09-14T16:35:42Z

Garcia: /* Basin Daily Growth */

== Basin Daily ==

{| {{table}}
| align="center" colspan='2' style="background:#f0f0f0;"|'''Column Contents'''
| align="center" style="background:#f0f0f0;"|'''Units'''
| align="center" style="background:#f0f0f0;"|'''Output Abbreviation'''
| align="center" style="background:#f0f0f0;"|'''Included as of version'''
|-
| 1||Day|| || ||
|-
| 2||Month|| || ||
|-
| 3||Year|| || ||
|-
| 4||Basin ID|| || ||
|-
| 5||Rain Throughfall||mm||pot_surface_infil||
|-
| 6||Snow Throughfall||mm||snow_thr||
|-
| 7||Saturation Deficit-depth||mm of depth||sat_def_z||
|-
| 8||Saturation Deficit-volume||mm of water||sat_def||
|-
| 8||Rooting Zone Storage||mm of water||rz_storage||
|-
| 9||Unsaturated Storage||mm||unsat_stor||
|-
| 10||Unsaturated Drainage||mm||unsat_drain||
|-
| 11||Capillary Rise||mm||cap||
|-
| 12||Evaporation||mm||evap||
|-
| 13||Snowpack Depth||mm||snow||
|-
| 14||Transpiration||mm||trans||
|-
| 15||Baseflow||mm||baseflow||
|-
| 20||Return Flow||mm||return||
|-
| 17||Total Stream Outflow||mm||streamflow||
|-
| 18||Net Photosynthesis||gC/m2||psn||
|-
| 19||Leaf Area Index||m2/m2||lai||
|-
| 20||Groundwater Output||mm||gw.Qout||
|-
| 21||Groundwater Nitrate Output||mm||gw.Nout||
|-
| 22||Groundwater Store||mm||gw.storage||rhessys5.10.5
|-
| 23||Groundwater Nitrate Store||mm||gw.NO3||rhessys5.10.5
|-
| 24||Detention Store||mm||detention_store||rhessys5.10.10
|-
| 25||Percent Saturated Area||m2/m2||%sat_area||rhessys5.10.10
|-
| 26||Litter Store||m2/m2||litter_store||rhessys5.10.12
|-
| 27||Canopy Store||m2/m2||canopy_store||
|-
| 28||Percent Snow Cover||m2/m2||X.snow_cover||rhessys5.10.12
|-
| 29||Snow sublimation||mm||snow_subl||
|-
| 30||trans_var||mm||trans_var||
|-
| 31||acc_trans||mm||acc_trans||
|-
| 32||acctrans_var||mm||acctrans_var||
|-
| 33||Potentail ET||mm||pet||
|-
| 34||dC13|| ||dC13||
|-
| 35||Rain||mm||precip||
|-
| 36||mortality||m2/m2||mortf||
|-
| 37||Basin-average Maximum Temp||deg C||tmax||
|-
| 38||Basin-average Minimum Temp||deg C||tmin||
|-
| 39||snowfall||mm||snowfall||
|}

== Basin Daily Growth ==

{| {{table}}
| align="center" colspan='2' style="background:#f0f0f0;"|'''Column Contents'''
| align="center" style="background:#f0f0f0;"|'''Units'''
| align="center" style="background:#f0f0f0;"|'''Output Abbreviation'''
| align="center" style="background:#f0f0f0;"|'''Included as of version'''
|-
| 1||Day|| ||
|-
| 2||Month|| ||
|-
| 3||Year|| ||
|-
| 4||Basin ID|| ||
|-
| 5||Gross Photosynthesis||kgC/m2||gpsn
|-
| 6||Plant Maintenance Respiration||mC/m2||plant_resp
|-
| 7||Soil Respiration||gC/m2/day||soil_resp||rhessys5.10.11
|-
| 8||Nitrate N||gN/m2||nitrate
|-
| 9||Mineralized N||gN/m2||sminn
|-
| 10||Plant C||kgC/m2||plantc
|-
| 11||Plant N||kgN/m2||plantn
|-
| 12||Litter C||kgC/m2||litrc
|-
| 13||Litter N||kgN/m2||litrn
|-
| 14||Soil C||kgC/m2||soilc
|-
| 15||Soil N||kgN/m2||soiln
|-
| 16||Streamflow Nitrate||gN/m2/day||streamflow_NO3
|-
| 17||Denitrification||gN/m2/day||denitrif
|-
| 18||Nitrification||gN/m2/day||nitrif
|-
| 19||Dissolved Organic Carbon loss||gC/m2/day||DOC
|-
| 20||Dissolved Organic Nitrogen loss||gN/m2/day||DON
|}

== Basin Monthly ==

{| {{table}}
| align="center" colspan='2' style="background:#f0f0f0;"|'''Column Contents'''
| align="center" style="background:#f0f0f0;"|'''Units'''
| align="center" style="background:#f0f0f0;"|'''Output Abbreviation'''
| align="center" style="background:#f0f0f0;"|'''Included as of version'''
|-
| 1||Month|| ||
|-
| 2||Year|| ||
|-
| 3||Basin ID|| ||
|-
| 4||Total Stream Outflow||mm||streamflow
|-
| 5||Nitrate to Stream||gN/m2||streamflow_NO3
|-
| 6||Denitrification||gN/m2||denitrif
|-
| 7||Dissolved Organic Carbon loss||gC/m2||DOC
|-
| 8||Dissolved Organic Nitrogen loss||gN/m2||DON
|-
| 9||Evapotranspiration||mm/m2||et
|-
| 10||Net Photosynthesis||gC/m2||psn
|-
| 11||Leaf Area Index||m2/m2||lai
|-
| 12||Nitrification||gN/m2||nitrif
|-
| 13||Mineralized Nitrate||gN/m2||mineralized
|-
| 14||Vegetation Nitrogen Uptake||gN/m2||uptake
|}

== Basin Yearly ==

{| {{table}}
| align="center" colspan='2' style="background:#f0f0f0;"|'''Column Contents'''
| align="center" style="background:#f0f0f0;"|'''Units'''
| align="center" style="background:#f0f0f0;"|'''RHESSys Output Abbreviation'''
| align="center" style="background:#f0f0f0;"|'''included as of version'''
|-
| 1||Year|| ||
|-
| 2||Basin ID|| ||
|-
| 3||Total Stream Outflow||mm||streamflow
|-
| 4||Nitrate to Stream||gN/m2||streamflow_NO3
|-
| 5||Denitrification||gN/m2||denitrif
|-
| 6||Dissolved Organic Carbon loss||gC/m2||DOC
|-
| 7||Dissolved Organic Nitrogen loss||gN/m2||DON
|-
| 8||Evapotranspiration||mm/m2||et
|-
| 9||Net Photosynthesis||gC/m2||psn
|-
| 10||Average Leaf Area Index||m2/m2||lai
|-
| 11||Nitrification||gN/m2||nitrif
|-
| 12||Mineralized N||gN/m2||mineralized
|-
| 13||Vegetation Uptake||gN/m2||uptake
|-
| 14||Number Threshold||?||num_thresh
|}

== Basin Yearly Growth ==

{| {{table}}
| align="center" colspan='2' style="background:#f0f0f0;"|'''Column Contents'''
| align="center" style="background:#f0f0f0;"|'''Units'''
| align="center" style="background:#f0f0f0;"|'''Output Abbreviation'''
| align="center" style="background:#f0f0f0;"|'''Included as of version'''
|-
| 1||Year|| || ||rhessys5.10.5
|-
| 2||Basin ID|| || ||rhessys5.10.5
|-
| 3||Gross Photosynthesis||gC/m2||gpsn||rhessys5.10.5
|-
| 4||Plant Respiration||mC/m2||plantresp||rhessys5.10.5
|-
| 5||New Carbon||mC/m2||newC||rhessys5.10.5
|-
| 6||?Soilhr?||??||soilhr||rhessys5.10.5
|-
| 7||?Streamflow Nitrate?||??||strN||rhessys5.10.5
|-
| 8||Denitrification||gN/m2||denitrif||rhessys5.10.5
|-
|
|}

== Hillslope Daily ==

{| {{table}}
| align="center" colspan='2' style="background:#f0f0f0;"|'''Column Contents'''
| align="center" style="background:#f0f0f0;"|'''Units'''
| align="center" style="background:#f0f0f0;"|'''Output Abbreviation'''
| align="center" style="background:#f0f0f0;"|'''Included as of version'''
|-
| 1||Day|| ||
|-
| 2||Month|| ||
|-
| 3||Year|| ||
|-
| 4||Basin ID|| ||
|-
| 5||Hillslope ID|| ||
|-
| 6||Rain Throughfall||mm||rain_thr
|-
| 7||Snow Throughfall||mm||snow_thr
|-
| 8||Saturation Deficit||mm of depth||sat_def_z
|-
| 9||Saturation Deficit||mm of water||sat_def
|-
| 10||Unsaturated Storage||mm||unsat_stor
|-
| 11||Unsaturated Drainage||mm||unsat_drain
|-
| 12||Capillary Rise||mm||cap
|-
| 13||Evaporation||mm||evap
|-
| 14||Snowpack Depth||mm||snow
|-
| 15||Transpiration||mm||trans
|-
| 16||Baseflow||mm||baseflow
|-
| 17||Return Flow||mm||return
|-
| 18||Total Stream Outflow||mm||streamflow
|-
| 19||Net Photosynthesis||kgC/m2||psn
|-
| 20||Leaf Area Index||m2/m2||lai
|-
| 21||Groundwater Output||mm||gw.Qout||rhessys5.10.5
|-
| 22||Groundwater Nitrate Output||mm||gw.Nout||rhessys5.10.5
|-
| 23||Groundwater Store||mm||gw.storage||rhessys5.10.5
|-
| 24||Groundwater Nitrate Store||mm||gw.N03||rhessys5.10.5
|}

== Hillslope Daily Growth ==

{| {{table}}
| align="center" colspan='2' style="background:#f0f0f0;"|'''Column Contents'''
| align="center" style="background:#f0f0f0;"|'''Units'''
| align="center" style="background:#f0f0f0;"|'''Output Abbreviation'''
| align="center" style="background:#f0f0f0;"|'''Included as of version'''
|-
| 1||Day|| ||
|-
| 2||Month|| ||
|-
| 3||Year|| ||
|-
| 4||Basin ID|| ||
|-
| 5||Hillslope ID|| ||
|-
| 6||Gross Photosynthesis||gC/m2||gpsn
|-
| 7||Maint Respiration||mC/m2||resp
|-
| 8||Nitrate N||gN/m2||nitrate
|-
| 9||Mineralized N||gN/m2||sminn
|-
| 10||Plant C||kgC/m2||plantc
|-
| 11||Plant N||kgN/m2||plantn
|-
| 12||Litter C||kgC/m2||litrc
|-
| 13||Litter N||kgN/m2||litrn
|-
| 14||Soil C||kgC/m2||soilc
|-
| 15||Soil N||kgN/m2||soiln
|-
| 16||Streamflow Nitrate||gN/m2/day||streamflow_NO3
|-
| 17||Streamflow||mm/day||streamflow
|-
| 18||Denitrification||gN/m2/day||denitrif
|-
| 19||Nitrification||gN/m2/day||nitrif
|-
| 20||Dissolved Organic Carbon loss||gC/m2/day||DOC
|-
| 21||Dissolved Organic Nitrogen loss||gN/m2/day||DON
|-
|
|}

== Hillslope Monthly ==

{| {{table}}
| align="center" colspan='2' style="background:#f0f0f0;"|'''Column Contents'''
| align="center" style="background:#f0f0f0;"|'''Units'''
| align="center" style="background:#f0f0f0;"|'''Output Abbreviation'''
| align="center" style="background:#f0f0f0;"|'''Included as of version'''
|-
| 1||Month|| || ||rhessys5.10.7
|-
| 2||Year|| ||
|-
| 3||Hillslope ID|| ||
|-
| 4||Streamflow||mm||streamflow
|-
| 5||Streamflow Nitrate||gN/m2/day||streamflow_N03
|-
| 6||Denitrification||gN/m2/day||denitrif
|-
| 7||Dissolved Organic Carbon Loss||gC/m2/day||DOC
|-
| 8||Dissolved Organic Nitrogen Loss||gN/m2/day||DON
|-
| 9||Evapotranspiration||mm/m2||et
|-
| 10||Net Photosynthesis||gC/m2||psn
|-
| 11||Leaf Area Index||m2/m2||lai
|-
| 12||Nitrification||gN/m2||nitrif
|-
| 13||Mineralized N||gN/m2||mineralized
|-
| 14||Vegetation Uptake||gN/m2||uptake
|}

== Hillslope Yearly ==

{| {{table}}
| align="center" colspan='2' style="background:#f0f0f0;"|'''Column Contents'''
| align="center" style="background:#f0f0f0;"|'''Units'''
| align="center" style="background:#f0f0f0;"|'''RHESSys Output Abbreviation'''
| align="center" style="background:#f0f0f0;"|'''included as of version'''
|-
| 1||Year|| || ||rhessys5.10.7
|-
| 2||Hillslope ID|| ||
|-
| 3||Streamflow||mm||streamflow
|-
| 4||Nitrate to Stream||gN/m2||streamflow_N03
|-
| 5||Denitrification||gN/m2||denitrif
|-
| 6||Dissolved Organic Carbon loss||gC/m2||DOC
|-
| 7||Dissolved Organic Nitrogen loss||gN/m2||DON
|-
| 8||Evapotranspiration||mm/m2||et
|-
| 9||Net Photosynthesis||gC/m2||psn
|-
| 10||Mineralized N||gN/m2||mineralized
|-
| 11||Vegetation Uptake||gN/m2||uptake
|}

== Zone Daily ==

{| {{table}}
| align="center" colspan='2' style="background:#f0f0f0;"|'''Column Contents'''
| align="center" style="background:#f0f0f0;"|'''Units'''
| align="center" style="background:#f0f0f0;"|'''Output Abbreviation'''
| align="center" style="background:#f0f0f0;"|'''Included as of version'''
|-
| 1||Day|| ||
|-
| 2||Month|| ||
|-
| 3||Year|| ||
|-
| 4||Basin ID|| ||
|-
| 5||Hillslope ID|| ||
|-
| 6||Zone ID|| ||
|-
| 7||Rainfall||mm||rain
|-
| 8||Snowfall||mm||snow
|-
| 9||Daytime Mean Air Temperature||C||tday
|-
| 10||Average Daily Temperature||C||tavg
|-
| 11||Vapour Pressure Deficit||Pa||vpd
|-
| 12||Direct Radiation||KJ/m2||Kdown_direct
|-
| 13||Diffuse Radiation||KJ/m2||Kdown_diffuse
|-
| 14||Direct PAR Radiation||KJ/m2||PAR_direct
|-
| 15||Diffuse PAR Radiation||KJ/m2||PAR_diffuse
|}

== Zone Monthly ==

{| {{table}}
| align="center" colspan='2' style="background:#f0f0f0;"|'''Column Contents'''
| align="center" style="background:#f0f0f0;"|'''Units'''
| align="center" style="background:#f0f0f0;"|'''Output Abbreviation'''
| align="center" style="background:#f0f0f0;"|'''Included as of version'''
|-
| 1||Month|| ||
|-
| 2||Year|| ||
|-
| 3||Basin ID|| ||
|-
| 4||Hillslope ID|| ||
|-
| 5||Zone ID|| ||
|-
| 6||Precipitation||mm||precip
|-
| 7||Direct Radiation||KJ/m2||K_direct
|-
| 8||Diffuse Radiation||KJ/m2||K_diffuse
|-
| 9||Average Max Daily Temperature||C||tmax
|-
| 10||Average Min Daily Temperature||C||tmin
|}

== Patch Daily ==

{| {{table}}
| align="center" colspan='2' style="background:#f0f0f0;"|'''Column Contents'''
| align="center" style="background:#f0f0f0;"|'''Units'''
| align="center" style="background:#f0f0f0;"|'''Output Abbreviation'''
| align="center" style="background:#f0f0f0;"|'''Included as of version'''
|-
| 1||Day|| ||
|-
| 2||Month|| ||
|-
| 3||Year|| ||
|-
| 4||Basin ID|| ||
|-
| 5||Hillslope ID|| ||
|-
| 6||Zone ID|| ||
|-
| 7||Patch ID|| ||
|-
| 8||Rain Throughfall||mm||rain_thr
|-
| 9||Detention Store||mm||detention_store||rhessys5.10.10
|-
| 10||Saturation Deficit (depth)||mm of depth||sat_def_z
|-
| 11||Saturation Deficit (water)||mm of water||sat_def
|-
| 12||Rooting Zone Storage||?||rz_storage
|-
| 13||Potential Rooting Zone Saturation||?||potentail_rz_stor
|-
| 14||Root Zone Field Capacity || ||rz_field_capacity
|-
| 15||Root Zone Wilting Point || ||rz_wilting_point
|-
| 16||Unsaturated Storage||mm||unsat_stor
|-
| 17||Root Zone Drainage || mm ||rz_drainage
|-
| 18||Unsaturated Drainage||mm||unsat_drain
|-
| 19||Sublimation|| ||sublimation
|-
| 20||Return Flow||mm||return
|-
| 21||Evaporation||mm||evap
|-
| 22||Evaporation from Surface||mm||evap_surface
|-
| 23||Soil Evaporation||mm||soil_evap
|-
| 24||Snowpack Depth||mm||snow
|-
| 25||Snow Melt||mm||snow_melt
|-
| 26||Saturated Transpiration||mm||trans_sat
|-
| 27||Unsaturated Transpiration||mm||trans_unsat
|-
| 28||Subsurface Flow to Stream||mm||Qin||
|-
| 29||Subsurface Flow to Stream||mm||Qout||
|-
| 30||Net Photosynthesis||kgC/m2||psn
|-
| 31||Root Zone Percent Saturation|| ||root_zone.S
|-
| 32||Root Depth||mm||root.depth
|-
| 33||Litter Rain Stored||mm||litter.rain_stor||rhessys5.10.10
|-
| 34||Litter Percent Saturation||m2/m2 ?||litter.S||rhessys5.10.9
|-
| 35||Area||m2 ?||area
|-
| 36||Potential Evapotranspiration||mm||pet
|-
| 37||Leaf Area Index||unitless||lai
|-
| 38||Baseflow||mm ?||baseflow
|-
| 39||Streamflow||mm ?||streamflow
|-
| 40||Precipitation||mm||pcp
|}

== Patch Daily Growth ==

{| {{table}}
| align="center" colspan='2' style="background:#f0f0f0;"|'''Column Contents'''
| align="center" style="background:#f0f0f0;"|'''Units'''
| align="center" style="background:#f0f0f0;"|'''Output Abbreviation'''
| align="center" style="background:#f0f0f0;"|'''Included as of version'''
|-
| 1||Day|| ||
|-
| 2||Month|| ||
|-
| 3||Year|| ||
|-
| 4||Basin ID|| ||
|-
| 5||Hillslope ID|| ||
|-
| 6||Zone ID|| ||
|-
| 7||Patch ID|| ||
|-
| 8||Leaf Area Index||m2/m2||lai
|-
| 9||Plant C||kgC/m2||plantc
|-
| 10||Net Photosynthesis||gC/m2||net_psn
|-
| 11||Plant Respiration||gC/m2/day||plant_resp||rhessys5.10.11
|-
| 12||Soil Respiration||gC/m2/day||soil_resp||rhessys5.10.11
|-
| 13||Labile Litter C||kgC/m2||litr1c
|-
| 14||Cellulose Litter C||kgC/m2||litr2c
|-
| 15||Shielded Cellulose Litter C||kgC/m2||litr3c
|-
| 16||Lignan Litter C||kgC/m2||litr4c
|-
| 17||Litter Rain Capacity||mm||lit.rain_cap||rhessys5.10.10
|-
| 18||Fast Soil C||kgC/m2||soil1c
|-
| 19||Medium Soil C||kgC/m2||soil2c
|-
| 20||Slow Soil C||kgC/m2||soil3c
|-
| 21||Recalcitrant Soil C||kgC/m2||soil4c
|-
| 22||Denitrification||gN/m2||denitrif
|-
| 23||Net Nitrate Flux (+in)||gN/m2||netleach
|-
| 24||Soil Nitrate||gN/m2||soilNO3
|-
| 25||Streamflow N||gN/m2||streamN03
|-
| 26||Surface N||gN/m2||surfaceN03
|-
| 27||Canopy Height||m||height
|-
| 28||Nitrogen Uptake||??||N-uptake
|-
| 29||Area||cells||area
|}

== Patch Monthly ==

{| {{table}}
| align="center" colspan='2' style="background:#f0f0f0;"|'''Column Contents'''
| align="center" style="background:#f0f0f0;"|'''Units'''
| align="center" style="background:#f0f0f0;"|'''Output Abbreviation'''
| align="center" style="background:#f0f0f0;"|'''Included as of version'''
|-
| 1||Month|| ||
|-
| 2||Year|| ||
|-
| 3||Basin ID|| ||
|-
| 4||Hillslope ID|| ||
|-
| 5||Zone ID|| ||
|-
| 6||Patch ID|| ||
|-
| 7||Net Nitrate Flux (+in)||gN/m2||leach
|-
| 8||Denitrification||gN/m2/month||denitrif
|-
| 9||Average Soil Moisture Deficit||mm||soil_moist_deficit
|-
| 10||Evapotranspiration||mm/m2/month||et
|-
| 11||Net Photosynthesis||gC/m2/month||psn
|-
| 12||Dissolved Organic Carbon loss||gC/m2/month||DOC
|-
| 13||Dissolved Organic Nitrogen loss||gN/m2/month||DON
|-
| 14||Average LAI||m2/m2||lai
|-
| 15||Nitrification||gN/m2/month||nitrif
|-
| 16||Mineralized N||gN/m2/month||mineralized
|-
| 17||Vegetation Uptake||gN/m2/month||uptake
|-
| 18||Theta||0-100 percent||theta
|}

== Patch Yearly ==

{| {{table}}
| align="center" style="background:#f0f0f0;"|'''Column Contents'''
| align="center" style="background:#f0f0f0;"|'''Units'''
| align="center" style="background:#f0f0f0;"|'''Output Abbreviation'''
| align="center" style="background:#f0f0f0;"|'''Included as of version'''
|-
| 1||Year|| ||
|-
| 2||Basin ID|| ||
|-
| 3||Hillslope ID|| ||
|-
| 4||Zone ID|| ||
|-
| 5||Patch ID|| ||
|-
| 6||Number of Days Below Sat. Threshold|| ||num_threshold_sat_def
|-
| 7||Net Nitrate Flux (+in)||gN/m2/year||leach
|-
| 8||Denitrification||gN/m2/year||denitrif
|-
| 9||Dissolved Organic Carbon loss||gC/m2/year||DOC_loss
|-
| 10||Dissolved Organic Nitrogen loss||gN/m2/year||DON_loss
|-
| 11||Net Photosynthesis||gC/m2||psn
|-
| 12||Evapotranspiration||mm/m2/year||et
|-
| 13||Maximum Leaf Area Index||m2/m2/year||lai
|-
| 14||Nitrification||gN/m2/year||nitrif
|-
| 15||Mineralized N||gN/m2year||mineralized
|-
| 16||Vegetation Uptake||gN/m2/year||uptake
|-
| 17||Theta||0-100 percent||theta
|}

== Patch Yearly Growth ==

{| {{table}}
| align="center" style="background:#f0f0f0;"|'''Column Contents'''
| align="center" style="background:#f0f0f0;"|'''Units'''
| align="center" style="background:#f0f0f0;"|'''Output Abbreviation'''
| align="center" style="background:#f0f0f0;"|'''Included as of version'''
|-
| 1||Year|| ||
|-
| 2||Basin ID|| ||
|-
| 3||Hillslope ID|| ||
|-
| 4||Zone ID|| ||
|-
| 5||Patch ID|| ||
|-
| 6||Litter C||kgC/m2||litter_c
|-
| 7||Soil C||kgC/m2/year||soil_c
|-
| 8||Litter N||kgN/m2/year||litter_n
|-
| 9||Soil N||kgN/m2/year||soil_n
|-
| 10||Soil Nitrate||gN/m2/year||nitrate
|-
| 11||Mineralized N||gN/m2||Sminn
|}

== Stratum Daily ==

{| {{table}}
| align="center" colspan='2' style="background:#f0f0f0;"|'''Column Contents'''
| align="center" style="background:#f0f0f0;"|'''Units'''
| align="center" style="background:#f0f0f0;"|'''Output Abbreviation'''
| align="center" style="background:#f0f0f0;"|'''Included as of version'''
|-
| 1||Day|| ||
|-
| 2||Month|| ||
|-
| 3||Year|| ||
|-
| 4||Basin ID|| ||
|-
| 5||Hillslope ID|| ||
|-
| 6||Zone ID|| ||
|-
| 7||Patch ID|| ||
|-
| 8||Stratum ID|| ||
|-
| 9||Leaf Area Index||m2/m2||lai
|-
| 10||Evaporation||mm||evap
|-
| 11||APAR Radiation||KJ/m2||APAR_direct
|-
| 12||APAR Radiation||KJ/m2||APAR_diffuse
|-
| 13||Sublimation||mm||sublim
|-
| 14||Transpiration||mm||trans
|-
| 15||Aerodynamic Conductance||mm/s||ga
|-
| 16||Surface (non-vascular) Conductance||m/s||gsurf
|-
| 17||Canopy Conductance||mm/s||gs
|-
| 18||??||??||?psi?||rhessys5.10.10
|-
| 19||Respiration||kgC/m2||leaf_day_mr
|-
| 20||Net Photosynthesis||gC/m2||psn_to_cpool
|-
| 21||Rain Interception Storage||mm||rain_stored
|-
| 22||Snow Interception Storage||mm||snow_stored
|-
| 23||Rooting Zone Saturation||??||rootzone.S
|}

== Stratum Daily Growth ==

{| {{table}}
| align="center" colspan='2' style="background:#f0f0f0;"|'''Column Contents'''
| align="center" style="background:#f0f0f0;"|'''Units'''
| align="center" style="background:#f0f0f0;"|'''Output Abbreviation'''
| align="center" style="background:#f0f0f0;"|'''Included as of version'''
|-
| 1||Day|| ||
|-
| 2||Month|| ||
|-
| 3||Year|| ||
|-
| 4||Basin ID|| ||
|-
| 5||Hillslope ID|| ||
|-
| 6||Zone ID|| ||
|-
| 7||Patch ID|| ||
|-
| 8||Stratum ID|| ||
|-
| 9||Leaf Area Index||m2/m2||proj_lai
|-
| 10||Leaf C||gN/m2||leafc
|-
| 11||Dead Leaf C||gN/m2||dead_leafc
|-
| 12||Fine Root C||gN/m2||frootc
|-
| 13||Live Stem C||gN/m2||live_stemc
|-
| 14||Leaf C Store||gN/m2||leafc_store
|-
| 15||Dead Stem C||gN/m2||dead_stemc
|-
| 16||Live Coarse Root C||gN/m2||live_crootc
|-
| 17||Dead Coarse Root C||gN/m2||dead_crootc
|-
| 18||Coarse Woody Debris C||gN/m2||cwdc
|-
| 19||Maint Respiration||gC/m2||mresp
|-
| 20||Growth Respiration||gC/m2||gresp
|-
| 21||Net Photosynthesis||gC/m2||psn_to_cpool
|-
| 22||Stand Age||days||age||rhessys5.10.9
|}

== Stratum Monthly ==

{| {{table}}
| align="center" colspan='2' style="background:#f0f0f0;"|'''Column Contents'''
| align="center" style="background:#f0f0f0;"|'''Units'''
| align="center" style="background:#f0f0f0;"|'''Output Abbreviation'''
| align="center" style="background:#f0f0f0;"|'''Included as of version'''
|-
| 1||Month|| ||
|-
| 2||Year|| ||
|-
| 3||Basin ID|| ||
|-
| 4||Hillslope ID|| ||
|-
| 5||Zone ID|| ||
|-
| 6||Patch ID|| ||
|-
| 7||Stratum ID|| ||
|-
| 8||Leaf Area Index||m2/m2||lai
|-
| 9||Net Photosynthesis||gC/m2||psn
|-
| 10||Mean Leaf Water Potential||mPa||lwp
|}

== Stratum Yearly ==

{| {{table}}
| align="center" colspan='2' style="background:#f0f0f0;"|'''Column Contents'''
| align="center" style="background:#f0f0f0;"|'''Units'''
| align="center" style="background:#f0f0f0;"|'''Output Abbreviation'''
| align="center" style="background:#f0f0f0;"|'''Included as of version'''
|-
| 1||Year|| ||
|-
| 2||Basin ID|| ||
|-
| 3||Hillslope ID|| ||
|-
| 4||Zone ID|| ||
|-
| 5||Patch ID|| ||
|-
| 6||Stratum ID|| ||
|-
| 7||Net Photosynthesis||kgC/m2||psn
|-
| 8||Mean Leaf Water Potential||mPa||lwp
|}

Strata

2012-06-19T19:01:24Z

Garcia:

{| {{table}}
| align="center" style="background:#f0f0f0;"|'''Variable Name'''
| align="center" style="background:#f0f0f0;"|'''Description'''
| align="center" style="background:#f0f0f0;"|'''Units'''
|-
| stratum_default_ID||Identifier used by stratum objects to indicate their stratum default files||unique value for each default file
|-
| K_absorptance||Direct radiation absorption coefficient||range (0 - 1)
|-
| K_reflectance||Direct radiation reflection coefficient i.e albedo||range (0 - 1)
|-
| K_transmittance||Direct radiation transmittance coefficient||range (0 - 1)
|-
| PAR_absorptance||PAR radiation absorption coefficient||range (0 - 1)
|-
| PAR_reflectance||PAR radiation reflection coefficient i.e albedo||range (0 - 1)
|-
| PAR_transmittance||PAR radiation transmittance coefficient||range (0 - 1)
|-
| epc.ext_coef||Canopy light extinction coefficient||range (0-1)
|-
| specific_rain_capacity||Intercepted rain storage capacity per LAI||metres / LAI
|-
| specific_snow_capacity||Intercepted snow storage capacity per LAI||metres / LAI
|-
| wind_attenuation_coef||Wind speed attenuation through canopy (exponential decay)||1/metres
|-
| ustar_overu||If u*/u ratio is available for aerodynamic conductance computation the use; otherwise set to -999.9||(metres/s) / (metres/s)
|-
| mrc.q10||Q10 for maintenance respiration||dimensionless
|-
| mrc.per_N||Maintainance respiration per unit nitrogen||Kg C / kg N / day
|-
| epc.gr_perc||Percent of new carbon allocation that is lost to growth respiration||range (0 - 1)
|-
| lai_stomatal_fraction||Stomatal fraction||range (0 - 1)
|-
| epc.flnr||Ration Leaf nitrogen in Rubisco to leaf nitrogen||Kg / kg
|-
| epc.ppfd_coef||Shape parameter for APAR / conductance hyperbola curve||s/metres2/micromol
|-
| epc.topt||Optimum air temperature for stomatal conductance||º C
|-
| epc.tmax||Maximum air temperature for stomatal conductance||º C
|-
| epc.tcoef||Coefficient of temperature curve for stomatal conductance||dimensionless
|-
| epc.psi_open||Leaf water potential for full stomatal conductance||Mpa
|-
| epc.psi_close||Leaf water potential for complete stomatal closure||Mpa
|-
| epc.vpd_open||Vapour pressure deficit for full stomatal conductance||Pa
|-
| epc.vpd_close||Vapour pressure deficit for complete stomatal closure||Pa
|-
| epc.gl_smax||Maximum stomatal conductance||metres / s
|-
| epc.gl_c||Leaf-scale cuticular conductance||metres/ s
|-
| gsurf_slope||Slope of nonvascular conductance vs storage curve - use 0 for vascular strata||dimensionless
|-
| gsurf_intercept||Intercept for nonvascular conductance vs storage curve -||dimensionless
|-
| epc.veg_type||Vegetation type||TREE or GRASS
|-
| epc.phenology_flag||Phenology flag (currently must be static, not modelled)||STATIC or DYNAMIC
|-
| epc.phenology_type||Phenology type||EVERGREEN or DECIDUOUS
|-
| epc.max_lai||Maximum leaf area||meters2 / kg C
|-
| epc.proj_sla||Specific leaf area||meters2 / kg C
|-
| epc.lai_ratio||All-sided LAI / one-sided LAI ratio||dimensionless
|-
| epc.proj_swa||Specific wood area (i.e pai per kg C of stem biomass)||1/kg C
|-
| epc.leaf_turnover||Annual leaf turnover fraction||range (0-1)
|-
| epc.day_leafon||Start of growing season||range(1-365)
|-
| epc.day_leafoff||Beginning of leaf drop||range(1-365)
|-
| epc.ndays_expand||Number of days for leaf out period||# days
|-
| epc.ndays_litfall||Number of days for litterfall perio||# days
|-
| epc.leaf_cn||Carbon:nitrogen ratio of leaves||Kg C / kg N
|-
| epc.leaflitr_cn||Carbon:nitrogen ratio of leaf litter after translocation||Kg C / kg N
|-
| min_heat_capacity||Maximum stratum heat capacity - 0 will ignore heat flux model||J/m3/ºK
|-
| max_heat_capacity||Minimum stratum heat capacity - 0 will ignore heat flux model||J/m3/ ºK
|-
| epc.allocation_flag||Allocation flag (if static, canopy will not grow, as if using V 4.6)||STATIC or DYNAMIC
|-
| epc.storage_transfer_prop||Amount of this year\'s annual allocation to be used - value < 1.0 will maintain a carbon store for use in bad years||range (0-1)
|-
| epc.froot_turnover||Annual fine root turnover fraction (percent carbon per year)||range (0-1)
|}

Utilities

2012-03-28T18:03:17Z

Garcia: /* BASIN DAILY WATER BALANCE FUNCTION */

== UPDATE A WORLDFILE FOR COMPATIBILITY WITH RHESSYS VERSION 5.14 ==

Rhessys versions 5.14 + require an additional state variable for the fraction of litter cover. To add this state variable line to an existing worldfile so you can use it with the newer version, you must apply the following awk script. Create a text file with the following commands, call it add_litfrac_lines.awk:

{a=0;}

($2 == "snowpack_energy_deficit") {printf("%f %s\n%f %s\n",$1,$2,1.0,"litter.cover_fraction"); a=1;}

(a == 0) {printf("%s %s\n",$1,$2);}

To apply to an existing worldfile and create a new worldfile compatible with rhessys5.14, type the following command:

awk -f add_litfrac_lines.awk < worldfile_to_change > new_worldfile_name

== BASIN DAILY WATER BALANCE FUNCTION ==

PASTE THE COMMANDS BELOW IN R TO CREATE THE WATER BALANCE FUNCTION

watbal = function(rb) {

rb$watbal.tmp=with(rb,precip-streamflow-trans-evap)

rb$sd=with(rb,sat_def-rz_storage-unsat_stor)

tmp=diff(rb$sd)

tmp=c(0,tmp)

rb$sddiff=tmp

tmp=diff(rb$snowpack)

tmp=c(0,tmp)

rb$snodiff=tmp

tmp=diff(rb$detention_store)

tmp=c(0,tmp)

rb$detdiff=tmp

tmp=diff(rb$litter_store)

tmp=c(0,tmp)

rb$litdiff=tmp

tmp=diff(rb$canopy_store)

tmp=c(0,tmp)

rb$candiff=tmp

tmp=diff(rb$gw.storage)

tmp=c(0,tmp)

rb$gwdiff=tmp

rb$watbal=with(rb,watbal.tmp+sddiff-snodiff-detdiff-litdiff-candiff-gwdiff)

rb

}

To use this function in an R data set:

If your '''b'''asin '''d'''aily output is called (for example) "bd" type "bd=watbal(bd)".

This will add a number of fields to your basin daily output file, the last
of which will be called "watbal". This is your water balance error.
You should see a minor numerical error here even if your water balances
(on the order of 10^-6). If your watbal values are negative then
water inputs are less than water outputs, and vice versa.

== PATCH DAILY WATER BALANCE FUNCTIONS ==

NOTES:

(1) Before you run the water balance script below, you must have
added a "rain" column to your patch daily output data that contains
the patch-specific precipitation. Be careful to add the right precip
values if your worldfile uses multiple base stations, isohyets,
or a precip lapse rate.

(2) These scripts will not work if you have multiple stratums.

TO RUN:

(1) In order to run this routine, you need to have brought into R a patch daily output file (pd) and have added a rain field and also have brought in a canopy (stratum) daily output file (sd).

(2) Copy and paste into R the water balance and multipatch run functions below (i.e., all the R commands below)

(3) If you only have a single patch and a single canopy, you can run the watbal function as-is. For example, if your patch output is called "pd" and your canopy stratum output is called "sd" then type:

rp=pwatbal(pd,sd)

This will add a number of fields to your patch output file, the last of which will be called "watbal". This is your water balance error. You should see a minor numerical error here even if your water balances (on the order of 10^-6). If your watbal values are negative then water inputs are less than water outputs, and vice versa.

(4) If you have multiple patches with only a single stratum per patch, you need to run a different script to loop through patches
individually, call the water balance function, then write the output. For example, if your patch output is called "pd" and your canopy stratum output is called "sd", and you want the water balance output written to a table called "out", then you would type:

out=pwatbalmult(rp,rc)

This creates a new output table, called "out" in this example, that contains date fields and a single column for each patch with the water balance error for that patch (called "P345","P578","P900", etc. where the field label number matches the patch ID). You might see a minor numerical error here even if your water balances (on the order of 10^-6). If your watbal values are negative then water inputs are less than water outputs and vice versa.

'''Note''' that this may take a long time to run if you have many patches; better to run on a single patch or a single hillslope than a full basin.

PASTE THE FOLLOWING COMMANDS INTO R FOR THE PATCH WATER BAL FUNCTION

pwatbal = function(qp,qc) {

qp$watbal.tmp=with(qp,rain+Qin-Qout-trans_sat-trans_unsat-evap-evap_surface-soil_evap)

qp$sd=with(qp,sat_def-rz_storage-unsat_stor)

tmp=diff(qp$sd)

tmp=c(0,tmp)

qp$sddiff=tmp

tmp=diff(qp$snow)

tmp=c(0,tmp)

qp$snodiff=tmp

tmp=diff(qp$detention_store)

tmp=c(0,tmp)

qp$detdiff=tmp

tmp=diff(qp$litter.rain_stor)

tmp=c(0,tmp)

qp$litdiff=tmp

tmp=diff(qc$rain_stored+qc$snow_stored)

tmp=c(0,tmp)

qp$candiff=tmp

qp$watbal=with(qp,watbal.tmp+sddiff-snodiff-detdiff-litdiff)

qp

}

PASTE THE FOLLOWING COMMANDS INTO R FOR THE MULTIPATCH RUN FUNCTION

pwatbalmult = function(rp,rc) {

pids=unique(rp$patchID)

tmp=subset(rp,rp$patchID==pids[1])

wbp=tmp[c("day","month","year")]

wbp=mkdate(wbp)

n=ncol(wbp)+1

for (i in pids) {

tmpp=subset(rp,rp$patchID==i)

tmpc=subset(rc,rc$patchID==i)

tmpp=pwatbal(tmpp,tmpc)

wbp[,n]=tmpp$watbal

names(wbp)[c(n)]=paste("P",i,sep="")

n=n+1

}

wbp

}

Zones

2012-02-11T03:21:21Z

Garcia: added units description to ndep in zone def

Output Files

2011-10-10T18:28:38Z

Garcia: /* Basin Daily */

== Basin Daily ==

{| {{table}}
| align="center" colspan='2' style="background:#f0f0f0;"|'''Column Contents'''
| align="center" style="background:#f0f0f0;"|'''Units'''
| align="center" style="background:#f0f0f0;"|'''Output Abbreviation'''
| align="center" style="background:#f0f0f0;"|'''Included as of version'''
|-
| 1||Day|| || ||
|-
| 2||Month|| || ||
|-
| 3||Year|| || ||
|-
| 4||Basin ID|| || ||
|-
| 5||Rain Throughfall||mm||pot_surface_infil||
|-
| 6||Snow Throughfall||mm||snow_thr||
|-
| 7||Saturation Deficit-depth||mm of depth||sat_def_z||
|-
| 8||Saturation Deficit-volume||mm of water||sat_def||
|-
| 8||Rooting Zone Storage||mm of water||rz_storage||
|-
| 9||Unsaturated Storage||mm||unsat_stor||
|-
| 10||Unsaturated Drainage||mm||unsat_drain||
|-
| 11||Capillary Rise||mm||cap||
|-
| 12||Evaporation||mm||evap||
|-
| 13||Snowpack Depth||mm||snow||
|-
| 14||Transpiration||mm||trans||
|-
| 15||Baseflow||mm||baseflow||
|-
| 20||Return Flow||mm||return||
|-
| 17||Total Stream Outflow||mm||streamflow||
|-
| 18||Net Photosynthesis||gC/m2||psn||
|-
| 19||Leaf Area Index||m2/m2||lai||
|-
| 20||Groundwater Output||mm||gw.Qout||
|-
| 21||Groundwater Nitrate Output||mm||gw.Nout||
|-
| 22||Groundwater Store||mm||gw.storage||rhessys5.10.5
|-
| 23||Groundwater Nitrate Store||mm||gw.NO3||rhessys5.10.5
|-
| 24||Detention Store||mm||detention_store||rhessys5.10.10
|-
| 25||Percent Saturated Area||m2/m2||%sat_area||rhessys5.10.10
|-
| 26||Litter Store||m2/m2||litter_store||rhessys5.10.12
|-
| 27||Canopy Store||m2/m2||canopy_store||
|-
| 28||Percent Snow Cover||m2/m2||X.snow_cover||rhessys5.10.12
|-
| 29||Snow sublimation||mm||snow_subl||
|-
| 30||trans_var||mm||trans_var||
|-
| 31||acc_trans||mm||acc_trans||
|-
| 32||acctrans_var||mm||acctrans_var||
|-
| 33||Potentail ET||mm||pet||
|-
| 34||dC13|| ||dC13||
|-
| 35||Rain||mm||precip||
|-
| 36||mortality||m2/m2||mortf||
|-
| 37||Basin-average Maximum Temp||deg C||tmax||
|-
| 38||Basin-average Minimum Temp||deg C||tmin||
|-
| 39||snowfall||mm||snowfall||
|}

== Basin Daily Growth ==

{| {{table}}
| align="center" colspan='2' style="background:#f0f0f0;"|'''Column Contents'''
| align="center" style="background:#f0f0f0;"|'''Units'''
| align="center" style="background:#f0f0f0;"|'''Output Abbreviation'''
| align="center" style="background:#f0f0f0;"|'''Included as of version'''
|-
| 1||Day|| ||
|-
| 2||Month|| ||
|-
| 3||Year|| ||
|-
| 4||Basin ID|| ||
|-
| 5||Gross Photosynthesis||gC/m2||gpsn
|-
| 6||Plant Maintenance Respiration||mC/m2||plant_resp
|-
| 7||Soil Respiration||gC/m2/day||soil_resp||rhessys5.10.11
|-
| 8||Nitrate N||gN/m2||nitrate
|-
| 9||Mineralized N||gN/m2||sminn
|-
| 10||Plant C||kgC/m2||plantc
|-
| 11||Plant N||kgN/m2||plantn
|-
| 12||Litter C||kgC/m2||litrc
|-
| 13||Litter N||kgN/m2||litrn
|-
| 14||Soil C||kgC/m2||soilc
|-
| 15||Soil N||kgN/m2||soiln
|-
| 16||Streamflow Nitrate||gN/m2/day||streamflow_NO3
|-
| 17||Denitrification||gN/m2/day||denitrif
|-
| 18||Nitrification||gN/m2/day||nitrif
|-
| 19||Dissolved Organic Carbon loss||gC/m2/day||DOC
|-
| 20||Dissolved Organic Nitrogen loss||gN/m2/day||DON
|}

== Basin Monthly ==

{| {{table}}
| align="center" colspan='2' style="background:#f0f0f0;"|'''Column Contents'''
| align="center" style="background:#f0f0f0;"|'''Units'''
| align="center" style="background:#f0f0f0;"|'''Output Abbreviation'''
| align="center" style="background:#f0f0f0;"|'''Included as of version'''
|-
| 1||Month|| ||
|-
| 2||Year|| ||
|-
| 3||Basin ID|| ||
|-
| 4||Total Stream Outflow||mm||streamflow
|-
| 5||Nitrate to Stream||gN/m2||streamflow_NO3
|-
| 6||Denitrification||gN/m2||denitrif
|-
| 7||Dissolved Organic Carbon loss||gC/m2||DOC
|-
| 8||Dissolved Organic Nitrogen loss||gN/m2||DON
|-
| 9||Evapotranspiration||mm/m2||et
|-
| 10||Net Photosynthesis||gC/m2||psn
|-
| 11||Leaf Area Index||m2/m2||lai
|-
| 12||Nitrification||gN/m2||nitrif
|-
| 13||Mineralized Nitrate||gN/m2||mineralized
|-
| 14||Vegetation Nitrogen Uptake||gN/m2||uptake
|}

== Basin Yearly ==

{| {{table}}
| align="center" colspan='2' style="background:#f0f0f0;"|'''Column Contents'''
| align="center" style="background:#f0f0f0;"|'''Units'''
| align="center" style="background:#f0f0f0;"|'''RHESSys Output Abbreviation'''
| align="center" style="background:#f0f0f0;"|'''included as of version'''
|-
| 1||Year|| ||
|-
| 2||Basin ID|| ||
|-
| 3||Total Stream Outflow||mm||streamflow
|-
| 4||Nitrate to Stream||gN/m2||streamflow_NO3
|-
| 5||Denitrification||gN/m2||denitrif
|-
| 6||Dissolved Organic Carbon loss||gC/m2||DOC
|-
| 7||Dissolved Organic Nitrogen loss||gN/m2||DON
|-
| 8||Evapotranspiration||mm/m2||et
|-
| 9||Net Photosynthesis||gC/m2||psn
|-
| 10||Average Leaf Area Index||m2/m2||lai
|-
| 11||Nitrification||gN/m2||nitrif
|-
| 12||Mineralized N||gN/m2||mineralized
|-
| 13||Vegetation Uptake||gN/m2||uptake
|-
| 14||Number Threshold||?||num_thresh
|}

== Basin Yearly Growth ==

{| {{table}}
| align="center" colspan='2' style="background:#f0f0f0;"|'''Column Contents'''
| align="center" style="background:#f0f0f0;"|'''Units'''
| align="center" style="background:#f0f0f0;"|'''Output Abbreviation'''
| align="center" style="background:#f0f0f0;"|'''Included as of version'''
|-
| 1||Year|| || ||rhessys5.10.5
|-
| 2||Basin ID|| || ||rhessys5.10.5
|-
| 3||Gross Photosynthesis||gC/m2||gpsn||rhessys5.10.5
|-
| 4||Plant Respiration||mC/m2||plantresp||rhessys5.10.5
|-
| 5||New Carbon||mC/m2||newC||rhessys5.10.5
|-
| 6||?Soilhr?||??||soilhr||rhessys5.10.5
|-
| 7||?Streamflow Nitrate?||??||strN||rhessys5.10.5
|-
| 8||Denitrification||gN/m2||denitrif||rhessys5.10.5
|-
|
|}

== Hillslope Daily ==

{| {{table}}
| align="center" colspan='2' style="background:#f0f0f0;"|'''Column Contents'''
| align="center" style="background:#f0f0f0;"|'''Units'''
| align="center" style="background:#f0f0f0;"|'''Output Abbreviation'''
| align="center" style="background:#f0f0f0;"|'''Included as of version'''
|-
| 1||Day|| ||
|-
| 2||Month|| ||
|-
| 3||Year|| ||
|-
| 4||Basin ID|| ||
|-
| 5||Hillslope ID|| ||
|-
| 6||Rain Throughfall||mm||rain_thr
|-
| 7||Snow Throughfall||mm||snow_thr
|-
| 8||Saturation Deficit||mm of depth||sat_def_z
|-
| 9||Saturation Deficit||mm of water||sat_def
|-
| 10||Unsaturated Storage||mm||unsat_stor
|-
| 11||Unsaturated Drainage||mm||unsat_drain
|-
| 12||Capillary Rise||mm||cap
|-
| 13||Evaporation||mm||evap
|-
| 14||Snowpack Depth||mm||snow
|-
| 15||Transpiration||mm||trans
|-
| 16||Baseflow||mm||baseflow
|-
| 17||Return Flow||mm||return
|-
| 18||Total Stream Outflow||mm||streamflow
|-
| 19||Net Photosynthesis||kgC/m2||psn
|-
| 20||Leaf Area Index||m2/m2||lai
|-
| 21||Groundwater Output||mm||gw.Qout||rhessys5.10.5
|-
| 22||Groundwater Nitrate Output||mm||gw.Nout||rhessys5.10.5
|-
| 23||Groundwater Store||mm||gw.storage||rhessys5.10.5
|-
| 24||Groundwater Nitrate Store||mm||gw.N03||rhessys5.10.5
|}

== Hillslope Daily Growth ==

{| {{table}}
| align="center" colspan='2' style="background:#f0f0f0;"|'''Column Contents'''
| align="center" style="background:#f0f0f0;"|'''Units'''
| align="center" style="background:#f0f0f0;"|'''Output Abbreviation'''
| align="center" style="background:#f0f0f0;"|'''Included as of version'''
|-
| 1||Day|| ||
|-
| 2||Month|| ||
|-
| 3||Year|| ||
|-
| 4||Basin ID|| ||
|-
| 5||Hillslope ID|| ||
|-
| 6||Gross Photosynthesis||gC/m2||gpsn
|-
| 7||Maint Respiration||mC/m2||resp
|-
| 8||Nitrate N||gN/m2||nitrate
|-
| 9||Mineralized N||gN/m2||sminn
|-
| 10||Plant C||kgC/m2||plantc
|-
| 11||Plant N||kgN/m2||plantn
|-
| 12||Litter C||kgC/m2||litrc
|-
| 13||Litter N||kgN/m2||litrn
|-
| 14||Soil C||kgC/m2||soilc
|-
| 15||Soil N||kgN/m2||soiln
|-
| 16||Streamflow Nitrate||gN/m2/day||streamflow_NO3
|-
| 17||Streamflow||mm/day||streamflow
|-
| 18||Denitrification||gN/m2/day||denitrif
|-
| 19||Nitrification||gN/m2/day||nitrif
|-
| 20||Dissolved Organic Carbon loss||gC/m2/day||DOC
|-
| 21||Dissolved Organic Nitrogen loss||gN/m2/day||DON
|-
|
|}

== Hillslope Monthly ==

{| {{table}}
| align="center" colspan='2' style="background:#f0f0f0;"|'''Column Contents'''
| align="center" style="background:#f0f0f0;"|'''Units'''
| align="center" style="background:#f0f0f0;"|'''Output Abbreviation'''
| align="center" style="background:#f0f0f0;"|'''Included as of version'''
|-
| 1||Month|| || ||rhessys5.10.7
|-
| 2||Year|| ||
|-
| 3||Hillslope ID|| ||
|-
| 4||Streamflow||mm||streamflow
|-
| 5||Streamflow Nitrate||gN/m2/day||streamflow_N03
|-
| 6||Denitrification||gN/m2/day||denitrif
|-
| 7||Dissolved Organic Carbon Loss||gC/m2/day||DOC
|-
| 8||Dissolved Organic Nitrogen Loss||gN/m2/day||DON
|-
| 9||Evapotranspiration||mm/m2||et
|-
| 10||Net Photosynthesis||gC/m2||psn
|-
| 11||Leaf Area Index||m2/m2||lai
|-
| 12||Nitrification||gN/m2||nitrif
|-
| 13||Mineralized N||gN/m2||mineralized
|-
| 14||Vegetation Uptake||gN/m2||uptake
|}

== Hillslope Yearly ==

{| {{table}}
| align="center" colspan='2' style="background:#f0f0f0;"|'''Column Contents'''
| align="center" style="background:#f0f0f0;"|'''Units'''
| align="center" style="background:#f0f0f0;"|'''RHESSys Output Abbreviation'''
| align="center" style="background:#f0f0f0;"|'''included as of version'''
|-
| 1||Year|| || ||rhessys5.10.7
|-
| 2||Hillslope ID|| ||
|-
| 3||Streamflow||mm||streamflow
|-
| 4||Nitrate to Stream||gN/m2||streamflow_N03
|-
| 5||Denitrification||gN/m2||denitrif
|-
| 6||Dissolved Organic Carbon loss||gC/m2||DOC
|-
| 7||Dissolved Organic Nitrogen loss||gN/m2||DON
|-
| 8||Evapotranspiration||mm/m2||et
|-
| 9||Net Photosynthesis||gC/m2||psn
|-
| 10||Mineralized N||gN/m2||mineralized
|-
| 11||Vegetation Uptake||gN/m2||uptake
|}

== Zone Daily ==

{| {{table}}
| align="center" colspan='2' style="background:#f0f0f0;"|'''Column Contents'''
| align="center" style="background:#f0f0f0;"|'''Units'''
| align="center" style="background:#f0f0f0;"|'''Output Abbreviation'''
| align="center" style="background:#f0f0f0;"|'''Included as of version'''
|-
| 1||Day|| ||
|-
| 2||Month|| ||
|-
| 3||Year|| ||
|-
| 4||Basin ID|| ||
|-
| 5||Hillslope ID|| ||
|-
| 6||Zone ID|| ||
|-
| 7||Rainfall||mm||rain
|-
| 8||Snowfall||mm||snow
|-
| 9||Daytime Mean Air Temperature||C||tday
|-
| 10||Average Daily Temperature||C||tavg
|-
| 11||Vapour Pressure Deficit||Pa||vpd
|-
| 12||Direct Radiation||KJ/m2||Kdown_direct
|-
| 13||Diffuse Radiation||KJ/m2||Kdown_diffuse
|-
| 14||Direct PAR Radiation||KJ/m2||PAR_direct
|-
| 15||Diffuse PAR Radiation||KJ/m2||PAR_diffuse
|}

== Zone Monthly ==

{| {{table}}
| align="center" colspan='2' style="background:#f0f0f0;"|'''Column Contents'''
| align="center" style="background:#f0f0f0;"|'''Units'''
| align="center" style="background:#f0f0f0;"|'''Output Abbreviation'''
| align="center" style="background:#f0f0f0;"|'''Included as of version'''
|-
| 1||Month|| ||
|-
| 2||Year|| ||
|-
| 3||Basin ID|| ||
|-
| 4||Hillslope ID|| ||
|-
| 5||Zone ID|| ||
|-
| 6||Precipitation||mm||precip
|-
| 7||Direct Radiation||KJ/m2||K_direct
|-
| 8||Diffuse Radiation||KJ/m2||K_diffuse
|-
| 9||Average Max Daily Temperature||C||tmax
|-
| 10||Average Min Daily Temperature||C||tmin
|}

== Patch Daily ==

{| {{table}}
| align="center" colspan='2' style="background:#f0f0f0;"|'''Column Contents'''
| align="center" style="background:#f0f0f0;"|'''Units'''
| align="center" style="background:#f0f0f0;"|'''Output Abbreviation'''
| align="center" style="background:#f0f0f0;"|'''Included as of version'''
|-
| 1||Day|| ||
|-
| 2||Month|| ||
|-
| 3||Year|| ||
|-
| 4||Basin ID|| ||
|-
| 5||Hillslope ID|| ||
|-
| 6||Zone ID|| ||
|-
| 7||Patch ID|| ||
|-
| 8||Rain Throughfall||mm||rain_thr
|-
| 9||Detention Store||mm||detention_store||rhessys5.10.10
|-
| 10||Saturation Deficit (depth)||mm of depth||sat_def_z
|-
| 11||Saturation Deficit (water)||mm of water||sat_def
|-
| 12||Rooting Zone Storage||?||rz_storage
|-
| 13||Potential Rooting Zone Saturation||?||potentail_rz_stor
|-
| 14||Root Zone Field Capacity || ||rz_field_capacity
|-
| 15||Root Zone Wilting Point || ||rz_wilting_point
|-
| 16||Unsaturated Storage||mm||unsat_stor
|-
| 17||Root Zone Drainage || mm ||rz_drainage
|-
| 18||Unsaturated Drainage||mm||unsat_drain
|-
| 19||Sublimation|| ||sublimation
|-
| 20||Return Flow||mm||return
|-
| 21||Evaporation||mm||evap
|-
| 22||Evaporation from Surface||mm||evap_surface
|-
| 23||Soil Evaporation||mm||soil_evap
|-
| 24||Snowpack Depth||mm||snow
|-
| 25||Snow Melt||mm||snow_melt
|-
| 26||Saturated Transpiration||mm||trans_sat
|-
| 27||Unsaturated Transpiration||mm||trans_unsat
|-
| 28||Subsurface Flow to Stream||mm||Qin||
|-
| 29||Subsurface Flow to Stream||mm||Qout||
|-
| 30||Net Photosynthesis||kgC/m2||psn
|-
| 31||Root Zone Percent Saturation|| ||root_zone.S
|-
| 32||Root Depth||mm||root.depth
|-
| 33||Litter Rain Stored||mm||litter.rain_stor||rhessys5.10.10
|-
| 34||Litter Percent Saturation||m2/m2 ?||litter.S||rhessys5.10.9
|-
| 35||Area||m2 ?||area
|-
| 36||Potential Evapotranspiration||mm||pet
|-
| 37||Leaf Area Index||unitless||lai
|-
| 38||Baseflow||mm ?||baseflow
|-
| 39||Streamflow||mm ?||streamflow
|-
| 40||Precipitation||mm||pcp
|}

== Patch Daily Growth ==

{| {{table}}
| align="center" colspan='2' style="background:#f0f0f0;"|'''Column Contents'''
| align="center" style="background:#f0f0f0;"|'''Units'''
| align="center" style="background:#f0f0f0;"|'''Output Abbreviation'''
| align="center" style="background:#f0f0f0;"|'''Included as of version'''
|-
| 1||Day|| ||
|-
| 2||Month|| ||
|-
| 3||Year|| ||
|-
| 4||Basin ID|| ||
|-
| 5||Hillslope ID|| ||
|-
| 6||Zone ID|| ||
|-
| 7||Patch ID|| ||
|-
| 8||Leaf Area Index||m2/m2||lai
|-
| 9||Plant C||kgC/m2||plantc
|-
| 10||Net Photosynthesis||gC/m2||net_psn
|-
| 11||Plant Respiration||gC/m2/day||plant_resp||rhessys5.10.11
|-
| 12||Soil Respiration||gC/m2/day||soil_resp||rhessys5.10.11
|-
| 13||Labile Litter C||kgC/m2||litr1c
|-
| 14||Cellulose Litter C||kgC/m2||litr2c
|-
| 15||Shielded Cellulose Litter C||kgC/m2||litr3c
|-
| 16||Lignan Litter C||kgC/m2||litr4c
|-
| 17||Litter Rain Capacity||mm||lit.rain_cap||rhessys5.10.10
|-
| 18||Fast Soil C||kgC/m2||soil1c
|-
| 19||Medium Soil C||kgC/m2||soil2c
|-
| 20||Slow Soil C||kgC/m2||soil3c
|-
| 21||Recalcitrant Soil C||kgC/m2||soil4c
|-
| 22||Denitrification||gN/m2||denitrif
|-
| 23||Net Nitrate Flux (+in)||gN/m2||netleach
|-
| 24||Soil Nitrate||gN/m2||soilNO3
|-
| 25||Streamflow N||gN/m2||streamN03
|-
| 26||Surface N||gN/m2||surfaceN03
|-
| 27||Canopy Height||m||height
|-
| 28||Nitrogen Uptake||??||N-uptake
|-
| 29||Area||cells||area
|}

== Patch Monthly ==

{| {{table}}
| align="center" colspan='2' style="background:#f0f0f0;"|'''Column Contents'''
| align="center" style="background:#f0f0f0;"|'''Units'''
| align="center" style="background:#f0f0f0;"|'''Output Abbreviation'''
| align="center" style="background:#f0f0f0;"|'''Included as of version'''
|-
| 1||Month|| ||
|-
| 2||Year|| ||
|-
| 3||Basin ID|| ||
|-
| 4||Hillslope ID|| ||
|-
| 5||Zone ID|| ||
|-
| 6||Patch ID|| ||
|-
| 7||Net Nitrate Flux (+in)||gN/m2||leach
|-
| 8||Denitrification||gN/m2/month||denitrif
|-
| 9||Average Soil Moisture Deficit||mm||soil_moist_deficit
|-
| 10||Evapotranspiration||mm/m2/month||et
|-
| 11||Net Photosynthesis||gC/m2/month||psn
|-
| 12||Dissolved Organic Carbon loss||gC/m2/month||DOC
|-
| 13||Dissolved Organic Nitrogen loss||gN/m2/month||DON
|-
| 14||Average LAI||m2/m2||lai
|-
| 15||Nitrification||gN/m2/month||nitrif
|-
| 16||Mineralized N||gN/m2/month||mineralized
|-
| 17||Vegetation Uptake||gN/m2/month||uptake
|-
| 18||Theta||0-100 percent||theta
|}

== Patch Yearly ==

{| {{table}}
| align="center" style="background:#f0f0f0;"|'''Column Contents'''
| align="center" style="background:#f0f0f0;"|'''Units'''
| align="center" style="background:#f0f0f0;"|'''Output Abbreviation'''
| align="center" style="background:#f0f0f0;"|'''Included as of version'''
|-
| 1||Year|| ||
|-
| 2||Basin ID|| ||
|-
| 3||Hillslope ID|| ||
|-
| 4||Zone ID|| ||
|-
| 5||Patch ID|| ||
|-
| 6||Number of Days Below Sat. Threshold|| ||num_threshold_sat_def
|-
| 7||Net Nitrate Flux (+in)||gN/m2/year||leach
|-
| 8||Denitrification||gN/m2/year||denitrif
|-
| 9||Dissolved Organic Carbon loss||gC/m2/year||DOC_loss
|-
| 10||Dissolved Organic Nitrogen loss||gN/m2/year||DON_loss
|-
| 11||Net Photosynthesis||gC/m2||psn
|-
| 12||Evapotranspiration||mm/m2/year||et
|-
| 13||Maximum Leaf Area Index||m2/m2/year||lai
|-
| 14||Nitrification||gN/m2/year||nitrif
|-
| 15||Mineralized N||gN/m2year||mineralized
|-
| 16||Vegetation Uptake||gN/m2/year||uptake
|-
| 17||Theta||0-100 percent||theta
|}

== Patch Yearly Growth ==

{| {{table}}
| align="center" style="background:#f0f0f0;"|'''Column Contents'''
| align="center" style="background:#f0f0f0;"|'''Units'''
| align="center" style="background:#f0f0f0;"|'''Output Abbreviation'''
| align="center" style="background:#f0f0f0;"|'''Included as of version'''
|-
| 1||Year|| ||
|-
| 2||Basin ID|| ||
|-
| 3||Hillslope ID|| ||
|-
| 4||Zone ID|| ||
|-
| 5||Patch ID|| ||
|-
| 6||Litter C||kgC/m2||litter_c
|-
| 7||Soil C||kgC/m2/year||soil_c
|-
| 8||Litter N||kgN/m2/year||litter_n
|-
| 9||Soil N||kgN/m2/year||soil_n
|-
| 10||Soil Nitrate||gN/m2/year||nitrate
|-
| 11||Mineralized N||gN/m2||Sminn
|}

== Stratum Daily ==

{| {{table}}
| align="center" colspan='2' style="background:#f0f0f0;"|'''Column Contents'''
| align="center" style="background:#f0f0f0;"|'''Units'''
| align="center" style="background:#f0f0f0;"|'''Output Abbreviation'''
| align="center" style="background:#f0f0f0;"|'''Included as of version'''
|-
| 1||Day|| ||
|-
| 2||Month|| ||
|-
| 3||Year|| ||
|-
| 4||Basin ID|| ||
|-
| 5||Hillslope ID|| ||
|-
| 6||Zone ID|| ||
|-
| 7||Patch ID|| ||
|-
| 8||Stratum ID|| ||
|-
| 9||Leaf Area Index||m2/m2||lai
|-
| 10||Evaporation||mm||evap
|-
| 11||APAR Radiation||KJ/m2||APAR_direct
|-
| 12||APAR Radiation||KJ/m2||APAR_diffuse
|-
| 13||Sublimation||mm||sublim
|-
| 14||Transpiration||mm||trans
|-
| 15||Aerodynamic Conductance||mm/s||ga
|-
| 16||Surface (non-vascular) Conductance||m/s||gsurf
|-
| 17||Canopy Conductance||mm/s||gs
|-
| 18||??||??||?psi?||rhessys5.10.10
|-
| 19||Respiration||kgC/m2||leaf_day_mr
|-
| 20||Net Photosynthesis||gC/m2||psn_to_cpool
|-
| 21||Rain Interception Storage||mm||rain_stored
|-
| 22||Snow Interception Storage||mm||snow_stored
|-
| 23||Rooting Zone Saturation||??||rootzone.S
|}

== Stratum Daily Growth ==

{| {{table}}
| align="center" colspan='2' style="background:#f0f0f0;"|'''Column Contents'''
| align="center" style="background:#f0f0f0;"|'''Units'''
| align="center" style="background:#f0f0f0;"|'''Output Abbreviation'''
| align="center" style="background:#f0f0f0;"|'''Included as of version'''
|-
| 1||Day|| ||
|-
| 2||Month|| ||
|-
| 3||Year|| ||
|-
| 4||Basin ID|| ||
|-
| 5||Hillslope ID|| ||
|-
| 6||Zone ID|| ||
|-
| 7||Patch ID|| ||
|-
| 8||Stratum ID|| ||
|-
| 9||Leaf Area Index||m2/m2||proj_lai
|-
| 10||Leaf C||gN/m2||leafc
|-
| 11||Dead Leaf C||gN/m2||dead_leafc
|-
| 12||Fine Root C||gN/m2||frootc
|-
| 13||Live Stem C||gN/m2||live_stemc
|-
| 14||Leaf C Store||gN/m2||leafc_store
|-
| 15||Dead Stem C||gN/m2||dead_stemc
|-
| 16||Live Coarse Root C||gN/m2||live_crootc
|-
| 17||Dead Coarse Root C||gN/m2||dead_crootc
|-
| 18||Coarse Woody Debris C||gN/m2||cwdc
|-
| 19||Maint Respiration||gC/m2||mresp
|-
| 20||Growth Respiration||gC/m2||gresp
|-
| 21||Net Photosynthesis||gC/m2||psn_to_cpool
|-
| 22||Stand Age||days||age||rhessys5.10.9
|}

== Stratum Monthly ==

{| {{table}}
| align="center" colspan='2' style="background:#f0f0f0;"|'''Column Contents'''
| align="center" style="background:#f0f0f0;"|'''Units'''
| align="center" style="background:#f0f0f0;"|'''Output Abbreviation'''
| align="center" style="background:#f0f0f0;"|'''Included as of version'''
|-
| 1||Month|| ||
|-
| 2||Year|| ||
|-
| 3||Basin ID|| ||
|-
| 4||Hillslope ID|| ||
|-
| 5||Zone ID|| ||
|-
| 6||Patch ID|| ||
|-
| 7||Stratum ID|| ||
|-
| 8||Leaf Area Index||m2/m2||lai
|-
| 9||Net Photosynthesis||gC/m2||psn
|-
| 10||Mean Leaf Water Potential||mPa||lwp
|}

== Stratum Yearly ==

{| {{table}}
| align="center" colspan='2' style="background:#f0f0f0;"|'''Column Contents'''
| align="center" style="background:#f0f0f0;"|'''Units'''
| align="center" style="background:#f0f0f0;"|'''Output Abbreviation'''
| align="center" style="background:#f0f0f0;"|'''Included as of version'''
|-
| 1||Year|| ||
|-
| 2||Basin ID|| ||
|-
| 3||Hillslope ID|| ||
|-
| 4||Zone ID|| ||
|-
| 5||Patch ID|| ||
|-
| 6||Stratum ID|| ||
|-
| 7||Net Photosynthesis||kgC/m2||psn
|-
| 8||Mean Leaf Water Potential||mPa||lwp
|}

Output Files

2011-01-17T21:16:23Z

Garcia: /* Patch Daily */

== Basin Daily ==

{| {{table}}
| align="center" colspan='2' style="background:#f0f0f0;"|'''Column Contents'''
| align="center" style="background:#f0f0f0;"|'''Units'''
| align="center" style="background:#f0f0f0;"|'''Output Abbreviation'''
| align="center" style="background:#f0f0f0;"|'''Included as of version'''
|-
| 1||Day|| || ||
|-
| 2||Month|| || ||
|-
| 3||Year|| || ||
|-
| 4||Basin ID|| || ||
|-
| 5||Rain Throughfall||mm||pot_surface_infil||
|-
| 6||Snow Throughfall||mm||snow_thr||
|-
| 7||Saturation Deficit-depth||mm of depth||sat_def_z||
|-
| 8||Saturation Deficit-volume||mm of water||sat_def||
|-
| 8||Rooting Zone Storage||mm of water||rz_storage||
|-
| 9||Unsaturated Storage||mm||unsat_stor||
|-
| 10||Unsaturated Drainage||mm||unsat_drain||
|-
| 11||Capillary Rise||mm||cap||
|-
| 12||Evaporation||mm||evap||
|-
| 13||Snowpack Depth||mm||snow||
|-
| 14||Transpiration||mm||trans||
|-
| 15||Baseflow||mm||baseflow||
|-
| 20||Return Flow||mm||return||
|-
| 17||Total Stream Outflow||mm||streamflow||
|-
| 18||Net Photosynthesis||kgC/m2||psn||
|-
| 19||Leaf Area Index||m2/m2||lai||
|-
| 20||Groundwater Output||mm||gw.Qout||
|-
| 21||Groundwater Nitrate Output||mm||gw.Nout||
|-
| 22||Groundwater Store||mm||gw.storage||rhessys5.10.5
|-
| 23||Groundwater Nitrate Store||mm||gw.NO3||rhessys5.10.5
|-
| 24||Detention Store||mm||detention_store||rhessys5.10.10
|-
| 25||Percent Saturated Area||m2/m2||%sat_area||rhessys5.10.10
|-
| 26||Litter Store||m2/m2||litter_store||rhessys5.10.12
|-
| 27||Percent Snow Cover||m2/m2||%snow_cover||rhessys5.10.12
|}

== Basin Daily Growth ==

{| {{table}}
| align="center" colspan='2' style="background:#f0f0f0;"|'''Column Contents'''
| align="center" style="background:#f0f0f0;"|'''Units'''
| align="center" style="background:#f0f0f0;"|'''Output Abbreviation'''
| align="center" style="background:#f0f0f0;"|'''Included as of version'''
|-
| 1||Day|| ||
|-
| 2||Month|| ||
|-
| 3||Year|| ||
|-
| 4||Basin ID|| ||
|-
| 5||Gross Photosynthesis||gC/m2||gpsn
|-
| 6||Plant Maintenance Respiration||mC/m2||plant_resp
|-
| 7||Soil Respiration||gC/m2/day||soil_resp||rhessys5.10.11
|-
| 8||Nitrate N||gN/m2||nitrate
|-
| 9||Mineralized N||gN/m2||sminn
|-
| 10||Plant C||kgC/m2||plantc
|-
| 11||Plant N||kgN/m2||plantn
|-
| 12||Litter C||kgC/m2||litrc
|-
| 13||Litter N||kgN/m2||litrn
|-
| 14||Soil C||kgC/m2||soilc
|-
| 15||Soil N||kgN/m2||soiln
|-
| 16||Streamflow Nitrate||gN/m2/day||streamflow_NO3
|-
| 17||Denitrification||gN/m2/day||denitrif
|-
| 18||Nitrification||gN/m2/day||nitrif
|-
| 19||Dissolved Organic Carbon loss||gC/m2/day||DOC
|-
| 20||Dissolved Organic Nitrogen loss||gN/m2/day||DON
|}

== Basin Monthly ==

{| {{table}}
| align="center" colspan='2' style="background:#f0f0f0;"|'''Column Contents'''
| align="center" style="background:#f0f0f0;"|'''Units'''
| align="center" style="background:#f0f0f0;"|'''Output Abbreviation'''
| align="center" style="background:#f0f0f0;"|'''Included as of version'''
|-
| 1||Month|| ||
|-
| 2||Year|| ||
|-
| 3||Basin ID|| ||
|-
| 4||Total Stream Outflow||mm||streamflow
|-
| 5||Nitrate to Stream||gN/m2||streamflow_NO3
|-
| 6||Denitrification||gN/m2||denitrif
|-
| 7||Dissolved Organic Carbon loss||gC/m2||DOC
|-
| 8||Dissolved Organic Nitrogen loss||gN/m2||DON
|-
| 9||Evapotranspiration||mm/m2||et
|-
| 10||Net Photosynthesis||gC/m2||psn
|-
| 11||Leaf Area Index||m2/m2||lai
|-
| 12||Nitrification||gN/m2||nitrif
|-
| 13||Mineralized Nitrate||gN/m2||mineralized
|-
| 14||Vegetation Nitrogen Uptake||gN/m2||uptake
|}

== Basin Yearly ==

{| {{table}}
| align="center" colspan='2' style="background:#f0f0f0;"|'''Column Contents'''
| align="center" style="background:#f0f0f0;"|'''Units'''
| align="center" style="background:#f0f0f0;"|'''RHESSys Output Abbreviation'''
| align="center" style="background:#f0f0f0;"|'''included as of version'''
|-
| 1||Year|| ||
|-
| 2||Basin ID|| ||
|-
| 3||Total Stream Outflow||mm||streamflow
|-
| 4||Nitrate to Stream||gN/m2||streamflow_NO3
|-
| 5||Denitrification||gN/m2||denitrif
|-
| 6||Dissolved Organic Carbon loss||gC/m2||DOC
|-
| 7||Dissolved Organic Nitrogen loss||gN/m2||DON
|-
| 8||Evapotranspiration||mm/m2||et
|-
| 9||Net Photosynthesis||gC/m2||psn
|-
| 10||Average Leaf Area Index||m2/m2||lai
|-
| 11||Nitrification||gN/m2||nitrif
|-
| 12||Mineralized N||gN/m2||mineralized
|-
| 13||Vegetation Uptake||gN/m2||uptake
|-
| 14||Number Threshold||?||num_thresh
|}

== Basin Yearly Growth ==

{| {{table}}
| align="center" colspan='2' style="background:#f0f0f0;"|'''Column Contents'''
| align="center" style="background:#f0f0f0;"|'''Units'''
| align="center" style="background:#f0f0f0;"|'''Output Abbreviation'''
| align="center" style="background:#f0f0f0;"|'''Included as of version'''
|-
| 1||Year|| || ||rhessys5.10.5
|-
| 2||Basin ID|| || ||rhessys5.10.5
|-
| 3||Gross Photosynthesis||gC/m2||gpsn||rhessys5.10.5
|-
| 4||Plant Respiration||mC/m2||plantresp||rhessys5.10.5
|-
| 5||New Carbon||mC/m2||newC||rhessys5.10.5
|-
| 6||?Soilhr?||??||soilhr||rhessys5.10.5
|-
| 7||?Streamflow Nitrate?||??||strN||rhessys5.10.5
|-
| 8||Denitrification||gN/m2||denitrif||rhessys5.10.5
|-
|
|}

== Hillslope Daily ==

{| {{table}}
| align="center" colspan='2' style="background:#f0f0f0;"|'''Column Contents'''
| align="center" style="background:#f0f0f0;"|'''Units'''
| align="center" style="background:#f0f0f0;"|'''Output Abbreviation'''
| align="center" style="background:#f0f0f0;"|'''Included as of version'''
|-
| 1||Day|| ||
|-
| 2||Month|| ||
|-
| 3||Year|| ||
|-
| 4||Basin ID|| ||
|-
| 5||Hillslope ID|| ||
|-
| 6||Rain Throughfall||mm||rain_thr
|-
| 7||Snow Throughfall||mm||snow_thr
|-
| 8||Saturation Deficit||mm of depth||sat_def_z
|-
| 9||Saturation Deficit||mm of water||sat_def
|-
| 10||Unsaturated Storage||mm||unsat_stor
|-
| 11||Unsaturated Drainage||mm||unsat_drain
|-
| 12||Capillary Rise||mm||cap
|-
| 13||Evaporation||mm||evap
|-
| 14||Snowpack Depth||mm||snow
|-
| 15||Transpiration||mm||trans
|-
| 16||Baseflow||mm||baseflow
|-
| 17||Return Flow||mm||return
|-
| 18||Total Stream Outflow||mm||streamflow
|-
| 19||Net Photosynthesis||kgC/m2||psn
|-
| 20||Leaf Area Index||m2/m2||lai
|-
| 21||Groundwater Output||mm||gw.Qout||rhessys5.10.5
|-
| 22||Groundwater Nitrate Output||mm||gw.Nout||rhessys5.10.5
|-
| 23||Groundwater Store||mm||gw.storage||rhessys5.10.5
|-
| 24||Groundwater Nitrate Store||mm||gw.N03||rhessys5.10.5
|}

== Hillslope Daily Growth ==

{| {{table}}
| align="center" colspan='2' style="background:#f0f0f0;"|'''Column Contents'''
| align="center" style="background:#f0f0f0;"|'''Units'''
| align="center" style="background:#f0f0f0;"|'''Output Abbreviation'''
| align="center" style="background:#f0f0f0;"|'''Included as of version'''
|-
| 1||Day|| ||
|-
| 2||Month|| ||
|-
| 3||Year|| ||
|-
| 4||Basin ID|| ||
|-
| 5||Hillslope ID|| ||
|-
| 6||Gross Photosynthesis||gC/m2||gpsn
|-
| 7||Maint Respiration||mC/m2||resp
|-
| 8||Nitrate N||gN/m2||nitrate
|-
| 9||Mineralized N||gN/m2||sminn
|-
| 10||Plant C||kgC/m2||plantc
|-
| 11||Plant N||kgN/m2||plantn
|-
| 12||Litter C||kgC/m2||litrc
|-
| 13||Litter N||kgN/m2||litrn
|-
| 14||Soil C||kgC/m2||soilc
|-
| 15||Soil N||kgN/m2||soiln
|-
| 16||Streamflow Nitrate||gN/m2/day||streamflow_NO3
|-
| 17||Streamflow||mm/day||streamflow
|-
| 18||Denitrification||gN/m2/day||denitrif
|-
| 19||Nitrification||gN/m2/day||nitrif
|-
| 20||Dissolved Organic Carbon loss||gC/m2/day||DOC
|-
| 21||Dissolved Organic Nitrogen loss||gN/m2/day||DON
|-
|
|}

== Hillslope Monthly ==

{| {{table}}
| align="center" colspan='2' style="background:#f0f0f0;"|'''Column Contents'''
| align="center" style="background:#f0f0f0;"|'''Units'''
| align="center" style="background:#f0f0f0;"|'''Output Abbreviation'''
| align="center" style="background:#f0f0f0;"|'''Included as of version'''
|-
| 1||Month|| || ||rhessys5.10.7
|-
| 2||Year|| ||
|-
| 3||Hillslope ID|| ||
|-
| 4||Streamflow||mm||streamflow
|-
| 5||Streamflow Nitrate||gN/m2/day||streamflow_N03
|-
| 6||Denitrification||gN/m2/day||denitrif
|-
| 7||Dissolved Organic Carbon Loss||gC/m2/day||DOC
|-
| 8||Dissolved Organic Nitrogen Loss||gN/m2/day||DON
|-
| 9||Evapotranspiration||mm/m2||et
|-
| 10||Net Photosynthesis||gC/m2||psn
|-
| 11||Leaf Area Index||m2/m2||lai
|-
| 12||Nitrification||gN/m2||nitrif
|-
| 13||Mineralized N||gN/m2||mineralized
|-
| 14||Vegetation Uptake||gN/m2||uptake
|}

== Hillslope Yearly ==

{| {{table}}
| align="center" colspan='2' style="background:#f0f0f0;"|'''Column Contents'''
| align="center" style="background:#f0f0f0;"|'''Units'''
| align="center" style="background:#f0f0f0;"|'''RHESSys Output Abbreviation'''
| align="center" style="background:#f0f0f0;"|'''included as of version'''
|-
| 1||Year|| || ||rhessys5.10.7
|-
| 2||Hillslope ID|| ||
|-
| 3||Streamflow||mm||streamflow
|-
| 4||Nitrate to Stream||gN/m2||streamflow_N03
|-
| 5||Denitrification||gN/m2||denitrif
|-
| 6||Dissolved Organic Carbon loss||gC/m2||DOC
|-
| 7||Dissolved Organic Nitrogen loss||gN/m2||DON
|-
| 8||Evapotranspiration||mm/m2||et
|-
| 9||Net Photosynthesis||gC/m2||psn
|-
| 10||Mineralized N||gN/m2||mineralized
|-
| 11||Vegetation Uptake||gN/m2||uptake
|}

== Zone Daily ==

{| {{table}}
| align="center" colspan='2' style="background:#f0f0f0;"|'''Column Contents'''
| align="center" style="background:#f0f0f0;"|'''Units'''
| align="center" style="background:#f0f0f0;"|'''Output Abbreviation'''
| align="center" style="background:#f0f0f0;"|'''Included as of version'''
|-
| 1||Day|| ||
|-
| 2||Month|| ||
|-
| 3||Year|| ||
|-
| 4||Basin ID|| ||
|-
| 5||Hillslope ID|| ||
|-
| 6||Zone ID|| ||
|-
| 7||Rainfall||mm||rain
|-
| 8||Snowfall||mm||snow
|-
| 9||Daytime Mean Air Temperature||C||tday
|-
| 10||Average Daily Temperature||C||tavg
|-
| 11||Vapour Pressure Deficit||Pa||vpd
|-
| 12||Direct Radiation||KJ/m2||Kdown_direct
|-
| 13||Diffuse Radiation||KJ/m2||Kdown_diffuse
|-
| 14||Direct PAR Radiation||KJ/m2||PAR_direct
|-
| 15||Diffuse PAR Radiation||KJ/m2||PAR_diffuse
|}

== Zone Monthly ==

{| {{table}}
| align="center" colspan='2' style="background:#f0f0f0;"|'''Column Contents'''
| align="center" style="background:#f0f0f0;"|'''Units'''
| align="center" style="background:#f0f0f0;"|'''Output Abbreviation'''
| align="center" style="background:#f0f0f0;"|'''Included as of version'''
|-
| 1||Month|| ||
|-
| 2||Year|| ||
|-
| 3||Basin ID|| ||
|-
| 4||Hillslope ID|| ||
|-
| 5||Zone ID|| ||
|-
| 6||Precipitation||mm||precip
|-
| 7||Direct Radiation||KJ/m2||K_direct
|-
| 8||Diffuse Radiation||KJ/m2||K_diffuse
|-
| 9||Average Max Daily Temperature||C||tmax
|-
| 10||Average Min Daily Temperature||C||tmin
|}

== Patch Daily ==

{| {{table}}
| align="center" colspan='2' style="background:#f0f0f0;"|'''Column Contents'''
| align="center" style="background:#f0f0f0;"|'''Units'''
| align="center" style="background:#f0f0f0;"|'''Output Abbreviation'''
| align="center" style="background:#f0f0f0;"|'''Included as of version'''
|-
| 1||Day|| ||
|-
| 2||Month|| ||
|-
| 3||Year|| ||
|-
| 4||Basin ID|| ||
|-
| 5||Hillslope ID|| ||
|-
| 6||Zone ID|| ||
|-
| 7||Patch ID|| ||
|-
| 8||Rain Throughfall||mm||rain_thr
|-
| 9||Detention Store||mm||detention_store||rhessys5.10.10
|-
| 10||Saturation Deficit (depth)||mm of depth||sat_def_z
|-
| 11||Saturation Deficit (water)||mm of water||sat_def
|-
| 12||Rooting Zone Storage||?||rz_storage
|-
| 13||Potential Rooting Zone Saturation||?||potentail_rz_stor
|-
| 14||Root Zone Field Capacity || ||rz_field_capacity
|-
| 15||Root Zone Wilting Point || ||rz_wilting_point
|-
| 16||Unsaturated Storage||mm||unsat_stor
|-
| 17||Root Zone Drainage || mm ||rz_drainage
|-
| 18||Unsaturated Drainage||mm||unsat_drain
|-
| 19||Sublimation|| ||sublimation
|-
| 20||Return Flow||mm||return
|-
| 21||Evaporation||mm||evap
|-
| 22||Evaporation from Surface||mm||evap_surface
|-
| 23||Soil Evaporation||mm||soil_evap
|-
| 24||Snowpack Depth||mm||snow
|-
| 25||Snow Melt||mm||snow_melt
|-
| 26||Saturated Transpiration||mm||trans_sat
|-
| 27||Unsaturated Transpiration||mm||trans_unsat
|-
| 28||Subsurface Flow to Stream||mm||Qin||
|-
| 29||Subsurface Flow to Stream||mm||Qout||
|-
| 30||Net Photosynthesis||kgC/m2||psn
|-
| 31||Root Zone Percent Saturation|| ||root_zone.S
|-
| 32||Root Depth||mm||root.depth
|-
| 33||Litter Rain Stored||mm||litter.rain_stor||rhessys5.10.10
|-
| 34||Litter Percent Saturation||m2/m2 ?||litter.S||rhessys5.10.9
|-
| 35||Area||m2 ?||area
|-
| 36||Potential Evapotranspiration||mm||pet
|-
| 37||Leaf Area Index||unitless||lai
|-
| 38||Baseflow||mm ?||baseflow
|-
| 39||Streamflow||mm ?||streamflow
|-
| 40||Precipitation||mm||pcp
|}

== Patch Daily Growth ==

{| {{table}}
| align="center" colspan='2' style="background:#f0f0f0;"|'''Column Contents'''
| align="center" style="background:#f0f0f0;"|'''Units'''
| align="center" style="background:#f0f0f0;"|'''Output Abbreviation'''
| align="center" style="background:#f0f0f0;"|'''Included as of version'''
|-
| 1||Day|| ||
|-
| 2||Month|| ||
|-
| 3||Year|| ||
|-
| 4||Basin ID|| ||
|-
| 5||Hillslope ID|| ||
|-
| 6||Zone ID|| ||
|-
| 7||Patch ID|| ||
|-
| 8||Leaf Area Index||m2/m2||lai
|-
| 9||Plant C||kgC/m2||plantc
|-
| 10||Net Photosynthesis||gC/m2||net_psn
|-
| 11||Plant Respiration||gC/m2/day||plant_resp||rhessys5.10.11
|-
| 12||Soil Respiration||gC/m2/day||soil_resp||rhessys5.10.11
|-
| 13||Labile Litter C||kgC/m2||litr1c
|-
| 14||Cellulose Litter C||kgC/m2||litr2c
|-
| 15||Shielded Cellulose Litter C||kgC/m2||litr3c
|-
| 16||Lignan Litter C||kgC/m2||litr4c
|-
| 17||Litter Rain Capacity||mm||lit.rain_cap||rhessys5.10.10
|-
| 18||Fast Soil C||kgC/m2||soil1c
|-
| 19||Medium Soil C||kgC/m2||soil2c
|-
| 20||Slow Soil C||kgC/m2||soil3c
|-
| 21||Recalcitrant Soil C||kgC/m2||soil4c
|-
| 22||Denitrification||gN/m2||denitrif
|-
| 23||Net Nitrate Flux (+in)||gN/m2||netleach
|-
| 24||Soil Nitrate||gN/m2||soilNO3
|-
| 25||Streamflow N||gN/m2||streamN03
|-
| 26||Surface N||gN/m2||surfaceN03
|-
| 27||Canopy Height||m||height
|-
| 28||Nitrogen Uptake||??||N-uptake
|-
| 29||Area||cells||area
|}

== Patch Monthly ==

{| {{table}}
| align="center" colspan='2' style="background:#f0f0f0;"|'''Column Contents'''
| align="center" style="background:#f0f0f0;"|'''Units'''
| align="center" style="background:#f0f0f0;"|'''Output Abbreviation'''
| align="center" style="background:#f0f0f0;"|'''Included as of version'''
|-
| 1||Month|| ||
|-
| 2||Year|| ||
|-
| 3||Basin ID|| ||
|-
| 4||Hillslope ID|| ||
|-
| 5||Zone ID|| ||
|-
| 6||Patch ID|| ||
|-
| 7||Net Nitrate Flux (+in)||gN/m2||leach
|-
| 8||Denitrification||gN/m2/month||denitrif
|-
| 9||Average Soil Moisture Deficit||mm||soil_moist_deficit
|-
| 10||Evapotranspiration||mm/m2/month||et
|-
| 11||Net Photosynthesis||gC/m2/month||psn
|-
| 12||Dissolved Organic Carbon loss||gC/m2/month||DOC
|-
| 13||Dissolved Organic Nitrogen loss||gN/m2/month||DON
|-
| 14||Average LAI||m2/m2||lai
|-
| 15||Nitrification||gN/m2/month||nitrif
|-
| 16||Mineralized N||gN/m2/month||mineralized
|-
| 17||Vegetation Uptake||gN/m2/month||uptake
|-
| 18||Theta||0-100 percent||theta
|}

== Patch Yearly ==

{| {{table}}
| align="center" style="background:#f0f0f0;"|'''Column Contents'''
| align="center" style="background:#f0f0f0;"|'''Units'''
| align="center" style="background:#f0f0f0;"|'''Output Abbreviation'''
| align="center" style="background:#f0f0f0;"|'''Included as of version'''
|-
| 1||Year|| ||
|-
| 2||Basin ID|| ||
|-
| 3||Hillslope ID|| ||
|-
| 4||Zone ID|| ||
|-
| 5||Patch ID|| ||
|-
| 6||Number of Days Below Sat. Threshold|| ||num_threshold_sat_def
|-
| 7||Net Nitrate Flux (+in)||gN/m2/year||leach
|-
| 8||Denitrification||gN/m2/year||denitrif
|-
| 9||Dissolved Organic Carbon loss||gC/m2/year||DOC_loss
|-
| 10||Dissolved Organic Nitrogen loss||gN/m2/year||DON_loss
|-
| 11||Net Photosynthesis||gC/m2||psn
|-
| 12||Evapotranspiration||mm/m2/year||et
|-
| 13||Maximum Leaf Area Index||m2/m2/year||lai
|-
| 14||Nitrification||gN/m2/year||nitrif
|-
| 15||Mineralized N||gN/m2year||mineralized
|-
| 16||Vegetation Uptake||gN/m2/year||uptake
|-
| 17||Theta||0-100 percent||theta
|}

== Patch Yearly Growth ==

{| {{table}}
| align="center" style="background:#f0f0f0;"|'''Column Contents'''
| align="center" style="background:#f0f0f0;"|'''Units'''
| align="center" style="background:#f0f0f0;"|'''Output Abbreviation'''
| align="center" style="background:#f0f0f0;"|'''Included as of version'''
|-
| 1||Year|| ||
|-
| 2||Basin ID|| ||
|-
| 3||Hillslope ID|| ||
|-
| 4||Zone ID|| ||
|-
| 5||Patch ID|| ||
|-
| 6||Litter C||kgC/m2||litter_c
|-
| 7||Soil C||kgC/m2/year||soil_c
|-
| 8||Litter N||kgN/m2/year||litter_n
|-
| 9||Soil N||kgN/m2/year||soil_n
|-
| 10||Soil Nitrate||gN/m2/year||nitrate
|-
| 11||Mineralized N||gN/m2||Sminn
|}

== Stratum Daily ==

{| {{table}}
| align="center" colspan='2' style="background:#f0f0f0;"|'''Column Contents'''
| align="center" style="background:#f0f0f0;"|'''Units'''
| align="center" style="background:#f0f0f0;"|'''Output Abbreviation'''
| align="center" style="background:#f0f0f0;"|'''Included as of version'''
|-
| 1||Day|| ||
|-
| 2||Month|| ||
|-
| 3||Year|| ||
|-
| 4||Basin ID|| ||
|-
| 5||Hillslope ID|| ||
|-
| 6||Zone ID|| ||
|-
| 7||Patch ID|| ||
|-
| 8||Stratum ID|| ||
|-
| 9||Leaf Area Index||m2/m2||lai
|-
| 10||Evaporation||mm||evap
|-
| 11||APAR Radiation||KJ/m2||APAR_direct
|-
| 12||APAR Radiation||KJ/m2||APAR_diffuse
|-
| 13||Sublimation||mm||sublim
|-
| 14||Transpiration||mm||trans
|-
| 15||Aerodynamic Conductance||mm/s||ga
|-
| 16||Surface (non-vascular) Conductance||m/s||gsurf
|-
| 17||Canopy Conductance||mm/s||gs
|-
| 18||??||??||?psi?||rhessys5.10.10
|-
| 19||Respiration||kgC/m2||leaf_day_mr
|-
| 20||Net Photosynthesis||gC/m2||psn_to_cpool
|-
| 21||Rain Interception Storage||mm||rain_stored
|-
| 22||Snow Interception Storage||mm||snow_stored
|-
| 23||Rooting Zone Saturation||??||rootzone.S
|}

== Stratum Daily Growth ==

{| {{table}}
| align="center" colspan='2' style="background:#f0f0f0;"|'''Column Contents'''
| align="center" style="background:#f0f0f0;"|'''Units'''
| align="center" style="background:#f0f0f0;"|'''Output Abbreviation'''
| align="center" style="background:#f0f0f0;"|'''Included as of version'''
|-
| 1||Day|| ||
|-
| 2||Month|| ||
|-
| 3||Year|| ||
|-
| 4||Basin ID|| ||
|-
| 5||Hillslope ID|| ||
|-
| 6||Zone ID|| ||
|-
| 7||Patch ID|| ||
|-
| 8||Stratum ID|| ||
|-
| 9||Leaf Area Index||m2/m2||proj_lai
|-
| 10||Leaf C||gN/m2||leafc
|-
| 11||Dead Leaf C||gN/m2||dead_leafc
|-
| 12||Fine Root C||gN/m2||frootc
|-
| 13||Live Stem C||gN/m2||live_stemc
|-
| 14||Leaf C Store||gN/m2||leafc_store
|-
| 15||Dead Stem C||gN/m2||dead_stemc
|-
| 16||Live Coarse Root C||gN/m2||live_crootc
|-
| 17||Dead Coarse Root C||gN/m2||dead_crootc
|-
| 18||Coarse Woody Debris C||gN/m2||cwdc
|-
| 19||Maint Respiration||gC/m2||mresp
|-
| 20||Growth Respiration||gC/m2||gresp
|-
| 21||Net Photosynthesis||gC/m2||psn_to_cpool
|-
| 22||Stand Age||days||age||rhessys5.10.9
|}

== Stratum Monthly ==

{| {{table}}
| align="center" colspan='2' style="background:#f0f0f0;"|'''Column Contents'''
| align="center" style="background:#f0f0f0;"|'''Units'''
| align="center" style="background:#f0f0f0;"|'''Output Abbreviation'''
| align="center" style="background:#f0f0f0;"|'''Included as of version'''
|-
| 1||Month|| ||
|-
| 2||Year|| ||
|-
| 3||Basin ID|| ||
|-
| 4||Hillslope ID|| ||
|-
| 5||Zone ID|| ||
|-
| 6||Patch ID|| ||
|-
| 7||Stratum ID|| ||
|-
| 8||Leaf Area Index||m2/m2||lai
|-
| 9||Net Photosynthesis||gC/m2||psn
|-
| 10||Mean Leaf Water Potential||mPa||lwp
|}

== Stratum Yearly ==

{| {{table}}
| align="center" colspan='2' style="background:#f0f0f0;"|'''Column Contents'''
| align="center" style="background:#f0f0f0;"|'''Units'''
| align="center" style="background:#f0f0f0;"|'''Output Abbreviation'''
| align="center" style="background:#f0f0f0;"|'''Included as of version'''
|-
| 1||Year|| ||
|-
| 2||Basin ID|| ||
|-
| 3||Hillslope ID|| ||
|-
| 4||Zone ID|| ||
|-
| 5||Patch ID|| ||
|-
| 6||Stratum ID|| ||
|-
| 7||Net Photosynthesis||kgC/m2||psn
|-
| 8||Mean Leaf Water Potential||mPa||lwp
|}

Output Files

2010-11-16T21:09:42Z

Garcia: update columns /* Patch Daily */

== Basin Daily ==

{| {{table}}
| align="center" colspan='2' style="background:#f0f0f0;"|'''Column Contents'''
| align="center" style="background:#f0f0f0;"|'''Units'''
| align="center" style="background:#f0f0f0;"|'''Output Abbreviation'''
| align="center" style="background:#f0f0f0;"|'''Included as of version'''
|-
| 1||Day|| || ||
|-
| 2||Month|| || ||
|-
| 3||Year|| || ||
|-
| 4||Basin ID|| || ||
|-
| 5||Rain Throughfall||mm||pot_surface_infil||
|-
| 6||Snow Throughfall||mm||snow_thr||
|-
| 7||Saturation Deficit-depth||mm of depth||sat_def_z||
|-
| 8||Saturation Deficit-volume||mm of water||sat_def||
|-
| 8||Rooting Zone Storage||mm of water||rz_storage||
|-
| 9||Unsaturated Storage||mm||unsat_stor||
|-
| 10||Unsaturated Drainage||mm||unsat_drain||
|-
| 11||Capillary Rise||mm||cap||
|-
| 12||Evaporation||mm||evap||
|-
| 13||Snowpack Depth||mm||snow||
|-
| 14||Transpiration||mm||trans||
|-
| 15||Baseflow||mm||baseflow||
|-
| 20||Return Flow||mm||return||
|-
| 17||Total Stream Outflow||mm||streamflow||
|-
| 18||Net Photosynthesis||kgC/m2||psn||
|-
| 19||Leaf Area Index||m2/m2||lai||
|-
| 20||Groundwater Output||mm||gw.Qout||
|-
| 21||Groundwater Nitrate Output||mm||gw.Nout||
|-
| 22||Groundwater Store||mm||gw.storage||rhessys5.10.5
|-
| 23||Groundwater Nitrate Store||mm||gw.NO3||rhessys5.10.5
|-
| 24||Detention Store||mm||detention_store||rhessys5.10.10
|-
| 25||Percent Saturated Area||m2/m2||%sat_area||rhessys5.10.10
|-
| 26||Litter Store||m2/m2||litter_store||rhessys5.10.12
|-
| 27||Percent Snow Cover||m2/m2||%snow_cover||rhessys5.10.12
|}

== Basin Daily Growth ==

{| {{table}}
| align="center" colspan='2' style="background:#f0f0f0;"|'''Column Contents'''
| align="center" style="background:#f0f0f0;"|'''Units'''
| align="center" style="background:#f0f0f0;"|'''Output Abbreviation'''
| align="center" style="background:#f0f0f0;"|'''Included as of version'''
|-
| 1||Day|| ||
|-
| 2||Month|| ||
|-
| 3||Year|| ||
|-
| 4||Basin ID|| ||
|-
| 5||Gross Photosynthesis||gC/m2||gpsn
|-
| 6||Plant Maintenance Respiration||mC/m2||plant_resp
|-
| 7||Soil Respiration||gC/m2/day||soil_resp||rhessys5.10.11
|-
| 8||Nitrate N||gN/m2||nitrate
|-
| 9||Mineralized N||gN/m2||sminn
|-
| 10||Plant C||kgC/m2||plantc
|-
| 11||Plant N||kgN/m2||plantn
|-
| 12||Litter C||kgC/m2||litrc
|-
| 13||Litter N||kgN/m2||litrn
|-
| 14||Soil C||kgC/m2||soilc
|-
| 15||Soil N||kgN/m2||soiln
|-
| 16||Streamflow Nitrate||gN/m2/day||streamflow_NO3
|-
| 17||Denitrification||gN/m2/day||denitrif
|-
| 18||Nitrification||gN/m2/day||nitrif
|-
| 19||Dissolved Organic Carbon loss||gC/m2/day||DOC
|-
| 20||Dissolved Organic Nitrogen loss||gN/m2/day||DON
|}

== Basin Monthly ==

{| {{table}}
| align="center" colspan='2' style="background:#f0f0f0;"|'''Column Contents'''
| align="center" style="background:#f0f0f0;"|'''Units'''
| align="center" style="background:#f0f0f0;"|'''Output Abbreviation'''
| align="center" style="background:#f0f0f0;"|'''Included as of version'''
|-
| 1||Month|| ||
|-
| 2||Year|| ||
|-
| 3||Basin ID|| ||
|-
| 4||Total Stream Outflow||mm||streamflow
|-
| 5||Nitrate to Stream||gN/m2||streamflow_NO3
|-
| 6||Denitrification||gN/m2||denitrif
|-
| 7||Dissolved Organic Carbon loss||gC/m2||DOC
|-
| 8||Dissolved Organic Nitrogen loss||gN/m2||DON
|-
| 9||Evapotranspiration||mm/m2||et
|-
| 10||Net Photosynthesis||gC/m2||psn
|-
| 11||Leaf Area Index||m2/m2||lai
|-
| 12||Nitrification||gN/m2||nitrif
|-
| 13||Mineralized Nitrate||gN/m2||mineralized
|-
| 14||Vegetation Nitrogen Uptake||gN/m2||uptake
|}

== Basin Yearly ==

{| {{table}}
| align="center" colspan='2' style="background:#f0f0f0;"|'''Column Contents'''
| align="center" style="background:#f0f0f0;"|'''Units'''
| align="center" style="background:#f0f0f0;"|'''RHESSys Output Abbreviation'''
| align="center" style="background:#f0f0f0;"|'''included as of version'''
|-
| 1||Year|| ||
|-
| 2||Basin ID|| ||
|-
| 3||Total Stream Outflow||mm||streamflow
|-
| 4||Nitrate to Stream||gN/m2||streamflow_NO3
|-
| 5||Denitrification||gN/m2||denitrif
|-
| 6||Dissolved Organic Carbon loss||gC/m2||DOC
|-
| 7||Dissolved Organic Nitrogen loss||gN/m2||DON
|-
| 8||Evapotranspiration||mm/m2||et
|-
| 9||Net Photosynthesis||gC/m2||psn
|-
| 10||Average Leaf Area Index||m2/m2||lai
|-
| 11||Nitrification||gN/m2||nitrif
|-
| 12||Mineralized N||gN/m2||mineralized
|-
| 13||Vegetation Uptake||gN/m2||uptake
|-
| 14||Number Threshold||?||num_thresh
|}

== Basin Yearly Growth ==

{| {{table}}
| align="center" colspan='2' style="background:#f0f0f0;"|'''Column Contents'''
| align="center" style="background:#f0f0f0;"|'''Units'''
| align="center" style="background:#f0f0f0;"|'''Output Abbreviation'''
| align="center" style="background:#f0f0f0;"|'''Included as of version'''
|-
| 1||Year|| || ||rhessys5.10.5
|-
| 2||Basin ID|| || ||rhessys5.10.5
|-
| 3||Gross Photosynthesis||gC/m2||gpsn||rhessys5.10.5
|-
| 4||Plant Respiration||mC/m2||plantresp||rhessys5.10.5
|-
| 5||New Carbon||mC/m2||newC||rhessys5.10.5
|-
| 6||?Soilhr?||??||soilhr||rhessys5.10.5
|-
| 7||?Streamflow Nitrate?||??||strN||rhessys5.10.5
|-
| 8||Denitrification||gN/m2||denitrif||rhessys5.10.5
|-
|
|}

== Hillslope Daily ==

{| {{table}}
| align="center" colspan='2' style="background:#f0f0f0;"|'''Column Contents'''
| align="center" style="background:#f0f0f0;"|'''Units'''
| align="center" style="background:#f0f0f0;"|'''Output Abbreviation'''
| align="center" style="background:#f0f0f0;"|'''Included as of version'''
|-
| 1||Day|| ||
|-
| 2||Month|| ||
|-
| 3||Year|| ||
|-
| 4||Basin ID|| ||
|-
| 5||Hillslope ID|| ||
|-
| 6||Rain Throughfall||mm||rain_thr
|-
| 7||Snow Throughfall||mm||snow_thr
|-
| 8||Saturation Deficit||mm of depth||sat_def_z
|-
| 9||Saturation Deficit||mm of water||sat_def
|-
| 10||Unsaturated Storage||mm||unsat_stor
|-
| 11||Unsaturated Drainage||mm||unsat_drain
|-
| 12||Capillary Rise||mm||cap
|-
| 13||Evaporation||mm||evap
|-
| 14||Snowpack Depth||mm||snow
|-
| 15||Transpiration||mm||trans
|-
| 16||Baseflow||mm||baseflow
|-
| 17||Return Flow||mm||return
|-
| 18||Total Stream Outflow||mm||streamflow
|-
| 19||Net Photosynthesis||kgC/m2||psn
|-
| 20||Leaf Area Index||m2/m2||lai
|-
| 21||Groundwater Output||mm||gw.Qout||rhessys5.10.5
|-
| 22||Groundwater Nitrate Output||mm||gw.Nout||rhessys5.10.5
|-
| 23||Groundwater Store||mm||gw.storage||rhessys5.10.5
|-
| 24||Groundwater Nitrate Store||mm||gw.N03||rhessys5.10.5
|}

== Hillslope Daily Growth ==

{| {{table}}
| align="center" colspan='2' style="background:#f0f0f0;"|'''Column Contents'''
| align="center" style="background:#f0f0f0;"|'''Units'''
| align="center" style="background:#f0f0f0;"|'''Output Abbreviation'''
| align="center" style="background:#f0f0f0;"|'''Included as of version'''
|-
| 1||Day|| ||
|-
| 2||Month|| ||
|-
| 3||Year|| ||
|-
| 4||Basin ID|| ||
|-
| 5||Hillslope ID|| ||
|-
| 6||Gross Photosynthesis||gC/m2||gpsn
|-
| 7||Maint Respiration||mC/m2||resp
|-
| 8||Nitrate N||gN/m2||nitrate
|-
| 9||Mineralized N||gN/m2||sminn
|-
| 10||Plant C||kgC/m2||plantc
|-
| 11||Plant N||kgN/m2||plantn
|-
| 12||Litter C||kgC/m2||litrc
|-
| 13||Litter N||kgN/m2||litrn
|-
| 14||Soil C||kgC/m2||soilc
|-
| 15||Soil N||kgN/m2||soiln
|-
| 16||Streamflow Nitrate||gN/m2/day||streamflow_NO3
|-
| 17||Streamflow||mm/day||streamflow
|-
| 18||Denitrification||gN/m2/day||denitrif
|-
| 19||Nitrification||gN/m2/day||nitrif
|-
| 20||Dissolved Organic Carbon loss||gC/m2/day||DOC
|-
| 21||Dissolved Organic Nitrogen loss||gN/m2/day||DON
|-
|
|}

== Hillslope Monthly ==

{| {{table}}
| align="center" colspan='2' style="background:#f0f0f0;"|'''Column Contents'''
| align="center" style="background:#f0f0f0;"|'''Units'''
| align="center" style="background:#f0f0f0;"|'''Output Abbreviation'''
| align="center" style="background:#f0f0f0;"|'''Included as of version'''
|-
| 1||Month|| || ||rhessys5.10.7
|-
| 2||Year|| ||
|-
| 3||Hillslope ID|| ||
|-
| 4||Streamflow||mm||streamflow
|-
| 5||Streamflow Nitrate||gN/m2/day||streamflow_N03
|-
| 6||Denitrification||gN/m2/day||denitrif
|-
| 7||Dissolved Organic Carbon Loss||gC/m2/day||DOC
|-
| 8||Dissolved Organic Nitrogen Loss||gN/m2/day||DON
|-
| 9||Evapotranspiration||mm/m2||et
|-
| 10||Net Photosynthesis||gC/m2||psn
|-
| 11||Leaf Area Index||m2/m2||lai
|-
| 12||Nitrification||gN/m2||nitrif
|-
| 13||Mineralized N||gN/m2||mineralized
|-
| 14||Vegetation Uptake||gN/m2||uptake
|}

== Hillslope Yearly ==

{| {{table}}
| align="center" colspan='2' style="background:#f0f0f0;"|'''Column Contents'''
| align="center" style="background:#f0f0f0;"|'''Units'''
| align="center" style="background:#f0f0f0;"|'''RHESSys Output Abbreviation'''
| align="center" style="background:#f0f0f0;"|'''included as of version'''
|-
| 1||Year|| || ||rhessys5.10.7
|-
| 2||Hillslope ID|| ||
|-
| 3||Streamflow||mm||streamflow
|-
| 4||Nitrate to Stream||gN/m2||streamflow_N03
|-
| 5||Denitrification||gN/m2||denitrif
|-
| 6||Dissolved Organic Carbon loss||gC/m2||DOC
|-
| 7||Dissolved Organic Nitrogen loss||gN/m2||DON
|-
| 8||Evapotranspiration||mm/m2||et
|-
| 9||Net Photosynthesis||gC/m2||psn
|-
| 10||Mineralized N||gN/m2||mineralized
|-
| 11||Vegetation Uptake||gN/m2||uptake
|}

== Zone Daily ==

{| {{table}}
| align="center" colspan='2' style="background:#f0f0f0;"|'''Column Contents'''
| align="center" style="background:#f0f0f0;"|'''Units'''
| align="center" style="background:#f0f0f0;"|'''Output Abbreviation'''
| align="center" style="background:#f0f0f0;"|'''Included as of version'''
|-
| 1||Day|| ||
|-
| 2||Month|| ||
|-
| 3||Year|| ||
|-
| 4||Basin ID|| ||
|-
| 5||Hillslope ID|| ||
|-
| 6||Zone ID|| ||
|-
| 7||Rainfall||mm||rain
|-
| 8||Snowfall||mm||snow
|-
| 9||Daytime Mean Air Temperature||C||tday
|-
| 10||Average Daily Temperature||C||tavg
|-
| 11||Vapour Pressure Deficit||Pa||vpd
|-
| 12||Direct Radiation||KJ/m2||Kdown_direct
|-
| 13||Diffuse Radiation||KJ/m2||Kdown_diffuse
|-
| 14||Direct PAR Radiation||KJ/m2||PAR_direct
|-
| 15||Diffuse PAR Radiation||KJ/m2||PAR_diffuse
|}

== Zone Monthly ==

{| {{table}}
| align="center" colspan='2' style="background:#f0f0f0;"|'''Column Contents'''
| align="center" style="background:#f0f0f0;"|'''Units'''
| align="center" style="background:#f0f0f0;"|'''Output Abbreviation'''
| align="center" style="background:#f0f0f0;"|'''Included as of version'''
|-
| 1||Month|| ||
|-
| 2||Year|| ||
|-
| 3||Basin ID|| ||
|-
| 4||Hillslope ID|| ||
|-
| 5||Zone ID|| ||
|-
| 6||Precipitation||mm||precip
|-
| 7||Direct Radiation||KJ/m2||K_direct
|-
| 8||Diffuse Radiation||KJ/m2||K_diffuse
|-
| 9||Average Max Daily Temperature||C||tmax
|-
| 10||Average Min Daily Temperature||C||tmin
|}

== Patch Daily ==

{| {{table}}
| align="center" colspan='2' style="background:#f0f0f0;"|'''Column Contents'''
| align="center" style="background:#f0f0f0;"|'''Units'''
| align="center" style="background:#f0f0f0;"|'''Output Abbreviation'''
| align="center" style="background:#f0f0f0;"|'''Included as of version'''
|-
| 1||Day|| ||
|-
| 2||Month|| ||
|-
| 3||Year|| ||
|-
| 4||Basin ID|| ||
|-
| 5||Hillslope ID|| ||
|-
| 6||Zone ID|| ||
|-
| 7||Patch ID|| ||
|-
| 8||Rain Throughfall||mm||rain_thr
|-
| 9||Detention Store||mm||detention_store||rhessys5.10.10
|-
| 10||Saturation Deficit (depth)||mm of depth||sat_def_z
|-
| 11||Saturation Deficit (water)||mm of water||sat_def
|-
| 12||Rooting Zone Storage||?||rz_storage
|-
| 13||Potential Rooting Zone Saturation||?||potentail_rz_stor
|-
| 14||Root Zone Field Capacity || ||rz_field_capacity
|-
| 15||Root Zone Wilting Point || ||rz_wilting_point
|-
| 16||Unsaturated Storage||mm||unsat_stor
|-
| 17||Root Zone Drainage || mm ||rz_drainage
|-
| 18||Unsaturated Drainage||mm||unsat_drain
|-
| 19||Sublimation|| ||sublimation
|-
| 20||Return Flow||mm||return
|-
| 21||Evaporation||mm||evap
|-
| 22||Evaporation from Surface||mm||evap_surface
|-
| 23||Soil Evaporation||mm||soil_evap
|-
| 24||Snowpack Depth||mm||snow
|-
| 25||Saturated Transpiration||mm||trans_sat
|-
| 25||Unsaturated Transpiration||mm||trans_unsat
|-
| 26||Subsurface Flow to Stream||mm||Qin||
|-
| 27||Subsurface Flow to Stream||mm||Qout||
|-
| 28||Net Photosynthesis||kgC/m2||psn
|-
| 29||Root Zone Percent Saturation|| ||root_zone.S
|-
| 30||Root Depth||mm||root_depth
|-
| 31||Litter Rain Stored||mm||litter.rain_stor||rhessys5.10.10
|-
| 32||Litter Percent Saturation||m2/m2 ?||litter.S||rhessys5.10.9
|-
| 33||Area||m2 ?||area
|-
| 32||Potential Evapotranspiration||mm||pet
|-
| 32||Leaf Area Index||unitless||lai
|-
| 32||Baseflow||mm ?||baseflow
|-
| 32||Streamflow||mm ?||streamflow
|}

== Patch Daily Growth ==

{| {{table}}
| align="center" colspan='2' style="background:#f0f0f0;"|'''Column Contents'''
| align="center" style="background:#f0f0f0;"|'''Units'''
| align="center" style="background:#f0f0f0;"|'''Output Abbreviation'''
| align="center" style="background:#f0f0f0;"|'''Included as of version'''
|-
| 1||Day|| ||
|-
| 2||Month|| ||
|-
| 3||Year|| ||
|-
| 4||Basin ID|| ||
|-
| 5||Hillslope ID|| ||
|-
| 6||Zone ID|| ||
|-
| 7||Patch ID|| ||
|-
| 8||Leaf Area Index||m2/m2||lai
|-
| 9||Plant C||kgC/m2||plantc
|-
| 10||Net Photosynthesis||gC/m2||net_psn
|-
| 11||Plant Respiration||gC/m2/day||plant_resp||rhessys5.10.11
|-
| 12||Soil Respiration||gC/m2/day||soil_resp||rhessys5.10.11
|-
| 13||Labile Litter C||kgC/m2||litr1c
|-
| 14||Cellulose Litter C||kgC/m2||litr2c
|-
| 15||Shielded Cellulose Litter C||kgC/m2||litr3c
|-
| 16||Lignan Litter C||kgC/m2||litr4c
|-
| 17||Litter Rain Capacity||mm||lit.rain_cap||rhessys5.10.10
|-
| 18||Fast Soil C||kgC/m2||soil1c
|-
| 19||Medium Soil C||kgC/m2||soil2c
|-
| 20||Slow Soil C||kgC/m2||soil3c
|-
| 21||Recalcitrant Soil C||kgC/m2||soil4c
|-
| 22||Denitrification||gN/m2||denitrif
|-
| 23||Net Nitrate Flux (+in)||gN/m2||netleach
|-
| 24||Soil Nitrate||gN/m2||soilNO3
|-
| 25||Streamflow N||gN/m2||streamN03
|-
| 26||Surface N||gN/m2||surfaceN03
|-
| 27||Canopy Height||m||height
|-
| 28||Nitrogen Uptake||??||N-uptake
|-
| 29||Area||cells||area
|}

== Patch Monthly ==

{| {{table}}
| align="center" colspan='2' style="background:#f0f0f0;"|'''Column Contents'''
| align="center" style="background:#f0f0f0;"|'''Units'''
| align="center" style="background:#f0f0f0;"|'''Output Abbreviation'''
| align="center" style="background:#f0f0f0;"|'''Included as of version'''
|-
| 1||Month|| ||
|-
| 2||Year|| ||
|-
| 3||Basin ID|| ||
|-
| 4||Hillslope ID|| ||
|-
| 5||Zone ID|| ||
|-
| 6||Patch ID|| ||
|-
| 7||Net Nitrate Flux (+in)||gN/m2||leach
|-
| 8||Denitrification||gN/m2/month||denitrif
|-
| 9||Average Soil Moisture Deficit||mm||soil_moist_deficit
|-
| 10||Evapotranspiration||mm/m2/month||et
|-
| 11||Net Photosynthesis||gC/m2/month||psn
|-
| 12||Dissolved Organic Carbon loss||gC/m2/month||DOC
|-
| 13||Dissolved Organic Nitrogen loss||gN/m2/month||DON
|-
| 14||Average LAI||m2/m2||lai
|-
| 15||Nitrification||gN/m2/month||nitrif
|-
| 16||Mineralized N||gN/m2/month||mineralized
|-
| 17||Vegetation Uptake||gN/m2/month||uptake
|-
| 18||Theta||0-100 percent||theta
|}

== Patch Yearly ==

{| {{table}}
| align="center" style="background:#f0f0f0;"|'''Column Contents'''
| align="center" style="background:#f0f0f0;"|'''Units'''
| align="center" style="background:#f0f0f0;"|'''Output Abbreviation'''
| align="center" style="background:#f0f0f0;"|'''Included as of version'''
|-
| 1||Year|| ||
|-
| 2||Basin ID|| ||
|-
| 3||Hillslope ID|| ||
|-
| 4||Zone ID|| ||
|-
| 5||Patch ID|| ||
|-
| 6||Number of Days Below Sat. Threshold|| ||num_threshold_sat_def
|-
| 7||Net Nitrate Flux (+in)||gN/m2/year||leach
|-
| 8||Denitrification||gN/m2/year||denitrif
|-
| 9||Dissolved Organic Carbon loss||gC/m2/year||DOC_loss
|-
| 10||Dissolved Organic Nitrogen loss||gN/m2/year||DON_loss
|-
| 11||Net Photosynthesis||gC/m2||psn
|-
| 12||Evapotranspiration||mm/m2/year||et
|-
| 13||Maximum Leaf Area Index||m2/m2/year||lai
|-
| 14||Nitrification||gN/m2/year||nitrif
|-
| 15||Mineralized N||gN/m2year||mineralized
|-
| 16||Vegetation Uptake||gN/m2/year||uptake
|-
| 17||Theta||0-100 percent||theta
|}

== Patch Yearly Growth ==

{| {{table}}
| align="center" style="background:#f0f0f0;"|'''Column Contents'''
| align="center" style="background:#f0f0f0;"|'''Units'''
| align="center" style="background:#f0f0f0;"|'''Output Abbreviation'''
| align="center" style="background:#f0f0f0;"|'''Included as of version'''
|-
| 1||Year|| ||
|-
| 2||Basin ID|| ||
|-
| 3||Hillslope ID|| ||
|-
| 4||Zone ID|| ||
|-
| 5||Patch ID|| ||
|-
| 6||Litter C||kgC/m2||litter_c
|-
| 7||Soil C||kgC/m2/year||soil_c
|-
| 8||Litter N||kgN/m2/year||litter_n
|-
| 9||Soil N||kgN/m2/year||soil_n
|-
| 10||Soil Nitrate||gN/m2/year||nitrate
|-
| 11||Mineralized N||gN/m2||Sminn
|}

== Stratum Daily ==

{| {{table}}
| align="center" colspan='2' style="background:#f0f0f0;"|'''Column Contents'''
| align="center" style="background:#f0f0f0;"|'''Units'''
| align="center" style="background:#f0f0f0;"|'''Output Abbreviation'''
| align="center" style="background:#f0f0f0;"|'''Included as of version'''
|-
| 1||Day|| ||
|-
| 2||Month|| ||
|-
| 3||Year|| ||
|-
| 4||Basin ID|| ||
|-
| 5||Hillslope ID|| ||
|-
| 6||Zone ID|| ||
|-
| 7||Patch ID|| ||
|-
| 8||Stratum ID|| ||
|-
| 9||Leaf Area Index||m2/m2||lai
|-
| 10||Evaporation||mm||evap
|-
| 11||APAR Radiation||KJ/m2||APAR_direct
|-
| 12||APAR Radiation||KJ/m2||APAR_diffuse
|-
| 13||Sublimation||mm||sublim
|-
| 14||Transpiration||mm||trans
|-
| 15||Aerodynamic Conductance||mm/s||ga
|-
| 16||Surface (non-vascular) Conductance||m/s||gsurf
|-
| 17||Canopy Conductance||mm/s||gs
|-
| 18||??||??||?psi?||rhessys5.10.10
|-
| 19||Respiration||kgC/m2||leaf_day_mr
|-
| 20||Net Photosynthesis||gC/m2||psn_to_cpool
|-
| 21||Rain Interception Storage||mm||rain_stored
|-
| 22||Snow Interception Storage||mm||snow_stored
|-
| 23||Rooting Zone Saturation||??||rootzone.S
|}

== Stratum Daily Growth ==

{| {{table}}
| align="center" colspan='2' style="background:#f0f0f0;"|'''Column Contents'''
| align="center" style="background:#f0f0f0;"|'''Units'''
| align="center" style="background:#f0f0f0;"|'''Output Abbreviation'''
| align="center" style="background:#f0f0f0;"|'''Included as of version'''
|-
| 1||Day|| ||
|-
| 2||Month|| ||
|-
| 3||Year|| ||
|-
| 4||Basin ID|| ||
|-
| 5||Hillslope ID|| ||
|-
| 6||Zone ID|| ||
|-
| 7||Patch ID|| ||
|-
| 8||Stratum ID|| ||
|-
| 9||Leaf Area Index||m2/m2||proj_lai
|-
| 10||Leaf C||gN/m2||leafc
|-
| 11||Dead Leaf C||gN/m2||dead_leafc
|-
| 12||Fine Root C||gN/m2||frootc
|-
| 13||Live Stem C||gN/m2||live_stemc
|-
| 14||Leaf C Store||gN/m2||leafc_store
|-
| 15||Dead Stem C||gN/m2||dead_stemc
|-
| 16||Live Coarse Root C||gN/m2||live_crootc
|-
| 17||Dead Coarse Root C||gN/m2||dead_crootc
|-
| 18||Coarse Woody Debris C||gN/m2||cwdc
|-
| 19||Maint Respiration||gC/m2||mresp
|-
| 20||Growth Respiration||gC/m2||gresp
|-
| 21||Net Photosynthesis||gC/m2||psn_to_cpool
|-
| 22||Stand Age||days||age||rhessys5.10.9
|}

== Stratum Monthly ==

{| {{table}}
| align="center" colspan='2' style="background:#f0f0f0;"|'''Column Contents'''
| align="center" style="background:#f0f0f0;"|'''Units'''
| align="center" style="background:#f0f0f0;"|'''Output Abbreviation'''
| align="center" style="background:#f0f0f0;"|'''Included as of version'''
|-
| 1||Month|| ||
|-
| 2||Year|| ||
|-
| 3||Basin ID|| ||
|-
| 4||Hillslope ID|| ||
|-
| 5||Zone ID|| ||
|-
| 6||Patch ID|| ||
|-
| 7||Stratum ID|| ||
|-
| 8||Leaf Area Index||m2/m2||lai
|-
| 9||Net Photosynthesis||gC/m2||psn
|-
| 10||Mean Leaf Water Potential||mPa||lwp
|}

== Stratum Yearly ==

{| {{table}}
| align="center" colspan='2' style="background:#f0f0f0;"|'''Column Contents'''
| align="center" style="background:#f0f0f0;"|'''Units'''
| align="center" style="background:#f0f0f0;"|'''Output Abbreviation'''
| align="center" style="background:#f0f0f0;"|'''Included as of version'''
|-
| 1||Year|| ||
|-
| 2||Basin ID|| ||
|-
| 3||Hillslope ID|| ||
|-
| 4||Zone ID|| ||
|-
| 5||Patch ID|| ||
|-
| 6||Stratum ID|| ||
|-
| 7||Net Photosynthesis||kgC/m2||psn
|-
| 8||Mean Leaf Water Potential||mPa||lwp
|}

How to get RHESSys

2010-10-28T20:31:07Z

Garcia: /* Build Instructions */

===Getting the source===
The source for RHESSys and various tools for use with RHESSys is hosted on [http://sourceforge.net/projects/rhessys/ sourceforge] and
accessible via anonymous subversion access. For the latest stable release, check out 

'''<pre>$> svn co https://rhessys.svn.sourceforge.net/svnroot/rhessys/tags/5.12.4</pre>'''

For the latest development version, check out

'''<pre>$> svn co https://rhessys.svn.sourceforge.net/svnroot/rhessys/trunk/</pre>'''

===Locating GRASS GISBASE===
====OS X====

If you are running GRASS from the application folder, your GISBASE will be
/Applications/<GRASS application name>/Contents/MacOS.
For example, if your GRASS application was named GRASS-6.4, you would
type the command:

<pre>
$> export GISBASE=/Applications/GRASS-6.4.app/Contents/MacOS
</pre>

====Linux====

====Windows====

===Building RHESSys===

The RHESSys source tree contains three separate tools: rhessys, cf, and g2w. Note that default values
are specified in the makefiles. This means if you choose to override them you must specify the
<code>-e</code> option when running <code>make</code>. As a convenience there is a makefile at the trunk
of the source tree that will build and install all RHESSys programs. Before running that file, make sure that
you have set all necessary environment variables as listed below.
====rhessys====

=====Dependencies=====
*None

=====Build Instructions=====
from the RHESSys/trunk directory containing the makefile

<code>$> make; make install</code>

=====Environmental Variables=====
{| {{table}}

| align="center" style="background:#f0f0f0;"|Name
| align="center" style="background:#f0f0f0;"|Description
| align="center" style="background:#f0f0f0;"|Default
|-
| RHESSYS_BIN
| The path of the RHESSys installation location
| /usr/local/bin
|-
|PGM
|Name of the RHESSys binary prodouced
|rhessys<version>
|-
|CC
|C Compiler to use
|gcc
|}

====cf====

=====Dependencies=====
* GRASS version 6.x

=====Build Instructions=====
<code>$> make; make install</code>

=====Environmental Variables=====
{| {{table}}

| align="center" style="background:#f0f0f0;"|Name
| align="center" style="background:#f0f0f0;"|Description
| align="center" style="background:#f0f0f0;"|Default
|-
| RHESSYS_BIN
| The path of the RHESSys installation location
| /usr/local/bin
|-
| PGM
| Name of the create flowpaths executable
| cf
|-
|GISBASE
|Base GRASS install
|none, this variable must be set
|-
|CC
|C Compiler to use
|gcc
|}

====g2w====

=====Dependencies=====
* GRASS version 6.x

=====Build Instructions=====
<code>$> make; make install</code>

=====Environmental Variables=====
{| {{table}}

| align="center" style="background:#f0f0f0;"|Name
| align="center" style="background:#f0f0f0;"|Description
| align="center" style="background:#f0f0f0;"|Default
|-
| RHESSYS_BIN
| The path of the RHESSys installation location
| /usr/local/bin
|-
| PGM
| Name of the grass2world executable
| g2w
|-
|GISBASE
|Base GRASS install
|none, this variable must be set
|-
|CC
|C Compiler to use
|gcc
|}